----------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~\
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/metatdenovo v1.3.0-g2a51399
----------------------------------------------------
Run Name: serene_rubens

####################################################
## nf-core/metatdenovo execution completed unsuccessfully! ##
####################################################
The exit status of the task that caused the workflow execution to fail was: 1.
The full error message was:

Error executing process > 'NFCORE_METATDENOVO:METATDENOVO:EGGNOG:EGGNOG_DOWNLOAD (EggNOG)'

Caused by:
  Process `NFCORE_METATDENOVO:METATDENOVO:EGGNOG:EGGNOG_DOWNLOAD (EggNOG)` terminated with an error exit status (1)


Command executed:

  download_eggnog_data.py \
       \
      -y \
      --data_dir .
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_METATDENOVO:METATDENOVO:EGGNOG:EGGNOG_DOWNLOAD":
      eggnog: $( echo $(emapper.py --version 2>&1)| sed 's/.* emapper-//' | sed 's/ \/ Expected.*//')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  /home/nspmpego/microbiota_photoperiodism/metatranscriptomics/ld_sd_meta/work/conda/env-e3d708a9ca94216a85c0f2948073114a/bin/download_eggnog_data.py:177: SyntaxWarning: "\." is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\."? A raw string is also an option.
    'outf=$(echo "$file" | sed "s/\.raw_alg\.faa\.gz/\.fa/"); '
  Traceback (most recent call last):
    File "/home/nspmpego/microbiota_photoperiodism/metatranscriptomics/ld_sd_meta/work/conda/env-e3d708a9ca94216a85c0f2948073114a/bin/download_eggnog_data.py", line 6, in <module>
      from eggnogmapper.common import get_eggnogdb_file, get_ncbitaxadb_file, get_eggnog_mmseqs_dbpath, get_pfam_dbpath, get_hmmer_base_dbpath
    File "/home/nspmpego/microbiota_photoperiodism/metatranscriptomics/ld_sd_meta/work/conda/env-e3d708a9ca94216a85c0f2948073114a/lib/python3.14/site-packages/eggnogmapper/common.py", line 6, in <module>
      from distutils.spawn import find_executable
  ModuleNotFoundError: No module named 'distutils'

Work dir:
  /home/nspmpego/microbiota_photoperiodism/metatranscriptomics/ld_sd_meta/work/80/f3e8d6ffea65482a6daec4f0ee85d9

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`



The workflow was completed at 2026-04-01T13:17:27.059867860+01:00 (duration: 11.4s)

The command used to launch the workflow was as follows:

  nextflow run nf-core/metatdenovo -profile conda --input samplesheet.csv --assembler megahit --save_bam --save_samtools --orf_caller prokka --eukulele_db phylodb --outdir results/ --email m.pegoraro@ljmu.ac.uk



Pipeline Configuration:
-----------------------
 - assembler: megahit
 - revision: master
 - runName: serene_rubens
 - launchDir: /home/nspmpego/microbiota_photoperiodism/metatranscriptomics/ld_sd_meta
 - workDir: /home/nspmpego/microbiota_photoperiodism/metatranscriptomics/ld_sd_meta/work
 - projectDir: /home/nspmpego/.nextflow/assets/nf-core/metatdenovo
 - userName: nspmpego
 - profile: conda
 - configFiles: /home/nspmpego/.nextflow/assets/nf-core/metatdenovo/nextflow.config
 - trace_report_suffix: 2026-04-01_13-17-13
 - input: samplesheet.csv
 - outdir: results/
 - email: m.pegoraro@ljmu.ac.uk
 - save_bam: true
 - orf_caller: prokka
 - eukulele_db: phylodb
 - Date Started: 2026-04-01T13:17:15.704221403+01:00
 - Date Completed: 2026-04-01T13:17:27.059867860+01:00
 - Pipeline script file path: /home/nspmpego/.nextflow/assets/nf-core/metatdenovo/main.nf
 - Pipeline script hash ID: c5ed939ed357bbcf91b5c438297a9234
 - Pipeline repository Git URL: https://github.com/nf-core/metatdenovo
 - Pipeline repository Git Commit: 2a51399ef548164750563a4bf581fa25a39770f8
 - Pipeline Git branch/tag: master
 - Nextflow Version: 25.10.4
 - Nextflow Build: 11173
 - Nextflow Compile Timestamp: 10-02-2026 15:17 UTC

--
nf-core/metatdenovo
https://github.com/nf-core/metatdenovo