Enterovirus Genotyping

Sample: MIXED_SAMPLE

Analysis date: 2025-11-26

Compilation of results for contigs with a coverage of at least 50x and length of at least 200bp.

Proposed interpretation: Please do manual assessment.
Show details (criteria for genotype suggestion)
A genotype is suggested if all following criteria is met:
• The genotype has the highest score for both identity and bitscore
• The genotype has the highest median for both identity and bitscore
• The genotype has at least 20 hits, 90% identity and 400 bitscore
⚠ Highest identity < 90%
BLAST analysis results

Explanation of figures

  • Figure 1 and 2: Circles indicate identity per matched sequence, diamonds indicate average value per contig.
  • Identity: How many nucleotides in alignment are identical.
  • Bit-score: Normalized score to statistically report how good the alignment is.

Reference information - Enterovirus genotypes per species

Enterovirus Species A

Complete list of genotypes

Enterovirus Species B

Complete list of genotypes

Enterovirus Species C

Complete list of genotypes

Enterovirus Species D

Complete list of genotypes

For additional analysis, the contigs can be analysed with:

RIVM Enterovirus Genotyping Tool

Contigs

🧬 Sequence data: 2 contig(s) found
>NODE_1_length_7494_cov_6933.730495_reverse_complement
>NODE_2_length_7430_cov_261.563001_reverse_complement

Generated automatically from nf-core/viralrecon using BLAST. This report was created during a collaboration between the Bioinformatics Unit of Instituto de Salud Carlos III (BU-ISCIII) and both Karolinska Institutet (KI) and Karolinska University Laboratory (KUL).