Compilation of results for contigs with a coverage of at least 50x and length of at least 200bp.
Proposed interpretation: Enterovirus A71
Show details (criteria for genotype suggestion)
A genotype is suggested if all following criteria is met:
• The genotype has the highest score for both identity and bitscore
• The genotype has the highest median for both identity and bitscore
• The genotype has at least 20 hits, 90% identity and 400 bitscore
• The genotype has the highest score for both identity and bitscore
• The genotype has the highest median for both identity and bitscore
• The genotype has at least 20 hits, 90% identity and 400 bitscore
Explanation of figures
- Figure 1 and 2: Circles indicate identity per matched sequence, diamonds indicate average value per contig.
- Identity: How many nucleotides in alignment are identical.
- Bit-score: Normalized score to statistically report how good the alignment is.
Reference information - Enterovirus genotypes per species
For additional analysis, the contigs can be analysed with:
RIVM Enterovirus Genotyping ToolContigs
🧬 Sequence data:
1 contig(s) found
>NODE_52_length_435_cov_480283.016575
