Compilation of results for all contigs (unfiltered data).
Proposed interpretation: No recomendation due to lack of contigs meeting filtering criteria.
Show details (criteria for genotype suggestion)
A genotype is suggested if all following criteria is met:
• The genotype has the highest score for both identity and bitscore
• The genotype has the highest median for both identity and bitscore
• The genotype has at least 20 hits, 90% identity and 400 bitscore
• The genotype has the highest score for both identity and bitscore
• The genotype has the highest median for both identity and bitscore
• The genotype has at least 20 hits, 90% identity and 400 bitscore
Note! No contigs met the criteria for standard analysis (at least 200bp length and 50x coverage). Showing
results for all available contigs.
Explanation of figures
- Figure 1 and 2: Circles indicate identity per matched sequence, diamonds indicate average value per contig.
- Identity: How many nucleotides in alignment are identical.
- Bit-score: Normalized score to statistically report how good the alignment is.
Reference information - Enterovirus genotypes per species
For additional analysis, the contigs can be analysed with:
RIVM Enterovirus Genotyping ToolContigs
🧬 Sequence data:
2 contig(s) found
>NODE_6667_length_394_cov_2.065421_reverse_complement
>NODE_28873_length_234_cov_1.937888
>NODE_28873_length_234_cov_1.937888
