FROM quay.io/biocontainers/civicpy:5.3.0--pyhdfd78af_0

USER root

RUN CIVIC_PY=$(find /usr/local/lib -path "*/civicpy/civic.py" 2>/dev/null | head -1) && \
    sed -i '/from backports.datetime_fromisoformat import MonkeyPatch/d' $CIVIC_PY && \
    sed -i '/MonkeyPatch.patch_fromisoformat()/d' $CIVIC_PY && \
    /usr/local/bin/pip3 install "ga4gh.vrs" "ga4gh.cat_vrs" "ga4gh.va_spec>=0.4.1,<0.5"