Sample total_reads paired_total paired_aligned_none paired_aligned_one paired_aligned_multi paired_aligned_mate_none paired_aligned_mate_one paired_aligned_mate_multi overall_alignment_rate paired_aligned_mate_multi_halved paired_aligned_mate_none_halved paired_aligned_mate_one_halved Td_Mut1365_1 97902660 97902660 12643516 79472393 5786751 16868816 8293715 124501 91.38 62250.5 8434408.0 4146857.5 Td_Mut1365_2 103935550 103935550 11548042 82921260 9466248 17006376 5941900 147808 91.82 73904.0 8503188.0 2970950.0 Td_Mut1365_3 101908705 101908705 12969423 81298053 7641229 17146349 8646959 145538 91.59 72769.0 8573174.5 4323479.5 Td_WT_1 126473574 126473574 14456628 80842445 31174501 18867956 9411316 633984 92.54 316992.0 9433978.0 4705658.0 Td_WT_2 131595231 131595231 17902564 106862675 6829992 23163498 12486362 155268 91.2 77634.0 11581749.0 6243181.0 Td_WT_3 103223610 103223610 11589235 68917704 22716671 15323957 7454303 400210 92.58 200105.0 7661978.5 3727151.5