Sample	picard_mark_duplicates-PERCENT_DUPLICATION	samtools_stats-error_rate	samtools_stats-non_primary_alignments	samtools_stats-reads_mapped	samtools_stats-reads_mapped_percent	samtools_stats-reads_properly_paired_percent	samtools_stats-reads_MQ0_percent	samtools_stats-raw_total_sequences	samtools_stats-insert_size_average	samtools_flagstat-flagstat_total	samtools_flagstat-mapped_passed	samtools_flagstat-mapped_passed_pct	fastqc_raw-percent_duplicates	fastqc_raw-percent_gc	fastqc_raw-avg_sequence_length	fastqc_raw-median_sequence_length	fastqc_raw-percent_fails	fastqc_raw-total_sequences	cutadapt-percent_trimmed	fastqc_trimmed-percent_duplicates	fastqc_trimmed-percent_gc	fastqc_trimmed-avg_sequence_length	fastqc_trimmed-median_sequence_length	fastqc_trimmed-percent_fails	fastqc_trimmed-total_sequences	bowtie2_alignment-overall_alignment_rate
Td_Mut1365													93.72074521056018	44.0	151.0	151.0	24.242424242424242	300.642256	7.581482544137241	93.81542066432512	43.0	139.85399206988356	151.0	21.21212121212121	299.74087	
Td_Mut1365 Read 1	72.2633	0.6806436	0.0	178.93650399999999	91.38490414867175	87.08562566124353	0.8254535678601583	195.80532	187.2	195.80532	178.93650399999999	91.38	93.98046988252447	44.0	151.0	151	27.27272727272727	98.218634	7.364140257629136	94.11246375475037	43.0	140.19378632817535	151	18.181818181818183	97.90266	91.38
Td_Mut1365 Read 2	74.54079999999999	0.6519444	0.0	190.864724	91.81878770064718	88.88922798792136	0.8214927423773675	207.87109999999998	176.1	207.87109999999998	190.864724	91.82	94.25449593585591	44.0	151.0	151	27.27272727272727	104.204988	8.182999482845362	94.37000598994933	43.0	138.90569645323473	151	27.27272727272727	103.93554999999999	91.82
Td_Mut1365_2													93.22629307030185	44.0	151.0	151	18.181818181818183	104.204988	8.000974670583176	93.25921141016009	44.0	139.1895177732739	151	18.181818181818183	103.93554999999999	
Td_Mut1365_3	73.0356	0.6722862	0.0	186.67106099999998	91.58739726895755	87.27348856017747	0.7978513709893575	203.81741	190.0	203.81741	186.67106099999998	91.59	93.65183866785878	44.0	151.0	151.0	22.727272727272727	204.270356	6.450145647575604	93.72867739683305	43.0	141.5172471625461	151.0	22.727272727272727	203.81741	91.59
Td_Mut1365_3 Read 1													93.21578525073565	44.0	151.0	151	18.181818181818183	102.135178	6.311208834906465	93.25979910803962	43.0	141.6773960772046	151	18.181818181818183	101.908705	
Td_Mut1365_3 Read 2													94.08789208498192	44.0	151.0	151	27.27272727272727	102.135178	6.589082460244744	94.19755568562645	43.0	141.35709824788765	151	27.27272727272727	101.908705	
Td_WT													94.56554461949217	43.986727761992476	151.0	151.0	24.242424242424242	385.461894	6.864887427585189	94.64623015728932	43.31557488492055	140.90225371752848	151.0	21.21212121212121	384.542379	
Td_WT Read 1	76.9347	0.6613072	0.0	234.07919199999998	92.54075163559465	88.56944771719664	0.9031649568154057	252.947148	185.4	252.947148	234.07919199999998	92.54	95.01582161842532	44.0	151.0	151	27.27272727272727	126.781984	7.0163112209510965	95.12229391571779	44.0	140.67290619936145	151	18.181818181818183	126.473574	92.54
Td_WT Read 2	75.1161	0.7280459	0.0	240.026964	91.1989599379935	86.3957349639821	0.925559376843983	263.19046199999997	190.2	263.19046199999997	240.026964	91.2	94.64839868658885	43.0	151.0	151	27.27272727272727	131.89792599999998	6.740035281786288	94.74601861025305	42.0	141.09623592666514	151	27.27272727272727	131.59523099999998	91.2
Td_WT_2													93.80470005469986	43.0	151.0	151	27.27272727272727	131.89792599999998	6.497572190987219	93.83892375504303	43.0	141.43883332671834	151	18.181818181818183	131.59523099999998	
Td_WT_3	75.6544	0.6798466000000001	0.0	191.12326299999998	92.57730038699479	88.77268969763797	0.9111965760546449	206.44722	182.3	206.44722	191.12326299999998	92.58	94.07488613299195	44.5	151.0	151.0	27.27272727272727	207.062054	7.799641330248931	94.14649148131271	44.0	139.52309093820688	151.0	22.727272727272727	206.44722	92.58
Td_WT_3 Read 1													93.61028626633153	45.0	151.0	151	27.27272727272727	103.531027	7.718467376013143	93.63586733148753	44.0	139.67988486355011	151	27.27272727272727	103.22361	
Td_WT_3 Read 2													94.53948599965237	44.0	151.0	151	27.27272727272727	103.531027	7.880815284484719	94.65711563113787	44.0	139.36629701286364	151	18.181818181818183	103.22361