Nextflow 25.10.2 is available - Please consider updating your version to it N E X T F L O W ~ version 25.04.0 Launching `https://github.com/nf-core/rnavar` [crazy_hamilton] DSL2 - revision: 2cbf046936 [master] ------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/rnavar 1.2.1 ------------------------------------------------------ Input/output options input : /data/myname/projects/rnavar_test/samplesheet_test.csv outdir : /data/myname/projects/rnavar_test/results_test tools : snpeff Variant filtering gatk_vf_qd_filter : 2.0 gatk_vf_fs_filter : 30.0 Variant Annotation snpeff_cache : /data/myname/bins/snpEff/data Pipeline stage options skip_baserecalibration: true Reference genome options genome : Olea_europaea fasta : /data/myname/refs/genomes/Olea_europaea/Olea_europaea.OLEA9.dna.toplevel.fa gtf : /data/myname/refs/genomes/Olea_europaea/Olea_europaea.OLEA9.62.gtf snpeff_db : Olea_europaea Generic options trace_report_suffix : 2025-12-02_15-35-48 Core Nextflow options revision : master runName : crazy_hamilton containerEngine : singularity launchDir : /data/myname/bins workDir : /data/myname/bins/work projectDir : /home/zephyr/.nextflow/assets/nf-core/rnavar userName : zephyr profile : singularity configFiles : /home/zephyr/.nextflow/assets/nf-core/rnavar/nextflow.config, /data/myname/bins/custom.config2 !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------ * The pipeline https://doi.org/10.5281/zenodo.6669636 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/rnavar/blob/master/CITATIONS.md [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY - [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED - [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY - [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED - [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [- ] NFC…PARE_GENOME:SAMTOOLS_FAIDX - [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION - [- ] NFC…GENOME:STAR_GENOMEGENERATE - [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [- ] NFCORE_RNAVAR:RNAVAR:CAT_FASTQ - [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY - [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED - [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [- ] NFC…PARE_GENOME:SAMTOOLS_FAIDX - [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION - [- ] NFC…GENOME:STAR_GENOMEGENERATE - [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [- ] NFCORE_RNAVAR:RNAVAR:CAT_FASTQ - [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 1 more processes waiting for tasks… [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY - [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED - [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [- ] NFC…PARE_GENOME:SAMTOOLS_FAIDX - [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION - [- ] NFC…GENOME:STAR_GENOMEGENERATE - [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [- ] NFCORE_RNAVAR:RNAVAR:CAT_FASTQ - [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 9 more processes waiting for tasks… [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY - [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED - [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [- ] NFC…PARE_GENOME:SAMTOOLS_FAIDX - [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION - [- ] NFC…GENOME:STAR_GENOMEGENERATE - [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [- ] NFCORE_RNAVAR:RNAVAR:CAT_FASTQ - [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 15 more processes waiting for tasks… [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY - [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED - [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [- ] NFC…PARE_GENOME:SAMTOOLS_FAIDX - [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION - [- ] NFC…GENOME:STAR_GENOMEGENERATE - [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [- ] NFCORE_RNAVAR:RNAVAR:CAT_FASTQ - [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 20 more processes waiting for tasks… [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY - [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED - [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [- ] NFC…PARE_GENOME:SAMTOOLS_FAIDX - [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION - [- ] NFC…GENOME:STAR_GENOMEGENERATE - [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [- ] NFCORE_RNAVAR:RNAVAR:CAT_FASTQ - [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (2) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [- ] NFC…VAR:PREPARE_GENOME:GTF2BED | 0 of 1 [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION | 0 of 1 [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 0 of 1 [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (3) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 0 of 1 [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [- ] NFC…E_GENOME:STAR_INDEXVERSION | 0 of 1 [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 0 of 1 [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (4) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 0 of 1 [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 0 of 1 [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (4) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [- ] NFC…4_CREATESEQUENCEDICTIONARY | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 0 of 1 [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 0 of 1 [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (5) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 0 of 1 [- ] NFCORE_RNAVAR:RNAVAR:FASTQC - [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (5) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [- ] NFCORE_RNAVAR:RNAVAR:FASTQC | 0 of 1 [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (6) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (6) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [- ] NFC…AR:GATK4_BEDTOINTERVALLIST - [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (6) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS - [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [- ] NFC…AR:GATK4_BEDTOINTERVALLIST | 0 of 1 [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (6) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS | 0 of 1 [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [- ] NFC…AR:GATK4_BEDTOINTERVALLIST | 0 of 1 [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (7) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS | 0 of 1 [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 0 of 1 [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (7) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [- ] NFC…OME:REMOVE_UNKNOWN_REGIONS | 0 of 1 [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 0 of 1 [- ] NFC…AR:GATK4_INTERVALLISTTOOLS - [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (8) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 0 of 1 [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…AR:GATK4_INTERVALLISTTOOLS | 0 of 1 [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (8) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 0 of 1 [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…AR:GATK4_INTERVALLISTTOOLS | 0 of 1 [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (9) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 0 of 1 [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (9) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 0 of 1 [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (9) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [- ] NFC…GENOME:STAR_GENOMEGENERATE | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 0 of 1 [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (10) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (10) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (10) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 0 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (10) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN - [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (10) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [- ] NFC…ASTQ_ALIGN_STAR:STAR_ALIGN | 0 of 1 [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (11) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 0 of 1 [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (11) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 0 of 1 [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT - [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (11) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 0 of 1 [- ] NFC…TOOLS_GENOME:SAMTOOLS_SORT | 0 of 1 [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (12) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 0 of 1 [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (12) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [- ] NFC…OOLS_GENOME:SAMTOOLS_INDEX - [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (13) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 0 of 1 [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (13) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 0 of 1 [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - Plus 21 more processes waiting for tasks… executor > local (14) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 0 of 1 [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 20 more processes waiting for tasks… executor > local (14) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 0 of 1 [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 20 more processes waiting for tasks… executor > local (14) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 20 more processes waiting for tasks… executor > local (14) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS - [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT - [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 20 more processes waiting for tasks… executor > local (15) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS | 0 of 1 [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 0 of 1 [- ] NFC…SAMTOOLS:SAMTOOLS_IDXSTATS | 0 of 1 [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 19 more processes waiting for tasks… executor > local (16) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 0 of 1 [- ] NFC…SAMTOOLS:SAMTOOLS_IDXSTATS | 0 of 1 [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 19 more processes waiting for tasks… executor > local (16) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [- ] NFC…SAMTOOLS:SAMTOOLS_IDXSTATS | 0 of 1 [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 19 more processes waiting for tasks… executor > local (17) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 0 of 1 [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 19 more processes waiting for tasks… executor > local (17) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 0 of 1 [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 19 more processes waiting for tasks… executor > local (17) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 0 of 1 Plus 19 more processes waiting for tasks… executor > local (17) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ Plus 19 more processes waiting for tasks… executor > local (18) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 0 of 1 Plus 18 more processes waiting for tasks… executor > local (18) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 0 of 1 Plus 18 more processes waiting for tasks… executor > local (18) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ Plus 18 more processes waiting for tasks… executor > local (18) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [- ] NFC…TS_SAMTOOLS:SAMTOOLS_STATS | 0 of 1 [- ] NFC…SAMTOOLS:SAMTOOLS_IDXSTATS | 0 of 1 Plus 16 more processes waiting for tasks… executor > local (20) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT | 0 of 1 [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 0 of 1 [- ] NFC…GAR:GATK4_SPLITNCIGARREADS | 0 of 4 Plus 14 more processes waiting for tasks… executor > local (20) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT | 0 of 1 [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 0 of 1 [- ] NFC…GAR:GATK4_SPLITNCIGARREADS | 0 of 4 Plus 14 more processes waiting for tasks… executor > local (20) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [- ] NFC…SAMTOOLS:SAMTOOLS_FLAGSTAT | 0 of 1 [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 0 of 1 [- ] NFC…GAR:GATK4_SPLITNCIGARREADS | 0 of 13 Plus 14 more processes waiting for tasks… executor > local (21) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 0 of 1 [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [- ] NFC…GAR:GATK4_SPLITNCIGARREADS | 0 of 25 Plus 14 more processes waiting for tasks… executor > local (22) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [b8/e081db] NFC…EADS (mysample_11scattered) | 0 of 25 Plus 14 more processes waiting for tasks… executor > local (22) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 0 of 1 [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [b8/e081db] NFC…EADS (mysample_11scattered) | 0 of 25 Plus 14 more processes waiting for tasks… executor > local (23) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d9/5a32b5] NFC…READS (mysample_6scattered) | 0 of 25 Plus 14 more processes waiting for tasks… executor > local (24) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [b9/beaba3] NFC…READS (mysample_2scattered) | 1 of 25 Plus 14 more processes waiting for tasks… executor > local (24) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [b9/beaba3] NFC…READS (mysample_2scattered) | 1 of 25 Plus 14 more processes waiting for tasks… executor > local (25) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [64/c14d61] NFC…EADS (mysample_15scattered) | 2 of 25 Plus 14 more processes waiting for tasks… executor > local (26) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [64/c14d61] NFC…EADS (mysample_15scattered) | 3 of 25 Plus 14 more processes waiting for tasks… executor > local (27) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [5c/fc83ad] NFC…EADS (mysample_10scattered) | 4 of 25 Plus 14 more processes waiting for tasks… executor > local (27) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [5c/fc83ad] NFC…EADS (mysample_10scattered) | 5 of 25 Plus 14 more processes waiting for tasks… executor > local (28) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [82/50f849] NFC…READS (mysample_9scattered) | 5 of 25 Plus 14 more processes waiting for tasks… executor > local (29) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [8f/e3ff24] NFC…READS (mysample_4scattered) | 6 of 25 Plus 14 more processes waiting for tasks… executor > local (29) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [8f/e3ff24] NFC…READS (mysample_4scattered) | 6 of 25 Plus 14 more processes waiting for tasks… executor > local (30) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [8f/e3ff24] NFC…READS (mysample_4scattered) | 7 of 25 Plus 14 more processes waiting for tasks… executor > local (30) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [8f/e3ff24] NFC…READS (mysample_4scattered) | 7 of 25 Plus 14 more processes waiting for tasks… executor > local (31) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d9/5a32b5] NFC…READS (mysample_6scattered) | 8 of 25 Plus 14 more processes waiting for tasks… executor > local (32) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [05/c0e24a] NFC…EADS (mysample_12scattered) | 9 of 25 Plus 14 more processes waiting for tasks… executor > local (33) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [05/c0e24a] NFC…EADS (mysample_12scattered) | 10 of 25 Plus 14 more processes waiting for tasks… executor > local (34) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [20/ee25d8] NFC…READS (mysample_5scattered) | 11 of 25 Plus 14 more processes waiting for tasks… executor > local (35) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [2c/8a29a0] NFC…EADS (mysample_16scattered) | 12 of 25 Plus 14 more processes waiting for tasks… executor > local (36) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d2/9c803c] NFC…EADS (mysample_13scattered) | 13 of 25 Plus 14 more processes waiting for tasks… executor > local (36) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [2c/8a29a0] NFC…EADS (mysample_16scattered) | 14 of 25 Plus 14 more processes waiting for tasks… executor > local (37) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [be/23b623] NFC…READS (mysample_3scattered) | 14 of 25 Plus 14 more processes waiting for tasks… executor > local (37) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d2/9c803c] NFC…EADS (mysample_13scattered) | 15 of 25 Plus 14 more processes waiting for tasks… executor > local (38) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d8/4dfb36] NFC…EADS (mysample_20scattered) | 15 of 25 Plus 14 more processes waiting for tasks… executor > local (39) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d8/4dfb36] NFC…EADS (mysample_20scattered) | 16 of 25 Plus 14 more processes waiting for tasks… executor > local (39) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d8/4dfb36] NFC…EADS (mysample_20scattered) | 16 of 25 Plus 14 more processes waiting for tasks… executor > local (39) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [d2/8123dd] NFC…EADS (mysample_21scattered) | 17 of 25 Plus 14 more processes waiting for tasks… executor > local (40) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [6b/944977] NFC…EADS (mysample_19scattered) | 17 of 25 Plus 14 more processes waiting for tasks… executor > local (41) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [fd/e49d36] NFC…EADS (mysample_18scattered) | 18 of 25 Plus 14 more processes waiting for tasks… executor > local (41) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [fd/e49d36] NFC…EADS (mysample_18scattered) | 18 of 25 Plus 14 more processes waiting for tasks… executor > local (42) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [71/a74473] NFC…EADS (mysample_17scattered) | 19 of 25 Plus 14 more processes waiting for tasks… executor > local (43) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [38/7d0e5e] NFC…EADS (mysample_22scattered) | 20 of 25 Plus 14 more processes waiting for tasks… executor > local (43) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [fd/e49d36] NFC…EADS (mysample_18scattered) | 21 of 25 Plus 14 more processes waiting for tasks… executor > local (44) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [29/9b4522] NFC…EADS (mysample_23scattered) | 21 of 25 Plus 14 more processes waiting for tasks… executor > local (45) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [11/181aad] NFC…EADS (mysample_24scattered) | 22 of 25 Plus 14 more processes waiting for tasks… executor > local (46) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 23 of 25 Plus 14 more processes waiting for tasks… executor > local (46) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [11/181aad] NFC…EADS (mysample_24scattered) | 24 of 25 Plus 14 more processes waiting for tasks… executor > local (46) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ Plus 14 more processes waiting for tasks… executor > local (46) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [- ] NFC…SPLITNCIGAR:SAMTOOLS_MERGE | 0 of 1 Plus 13 more processes waiting for tasks… executor > local (47) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 0 of 1 Plus 13 more processes waiting for tasks… executor > local (47) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [- ] NFC…SPLITNCIGAR:SAMTOOLS_INDEX | 0 of 1 Plus 12 more processes waiting for tasks… executor > local (48) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 0 of 1 Plus 12 more processes waiting for tasks… executor > local (48) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > local (50) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [e3/0b04c5] NFC…LLER (mysample_11scattered) | 0 of 25 Plus 11 more processes waiting for tasks… executor > local (51) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [e3/0b04c5] NFC…LLER (mysample_11scattered) | 1 of 25 Plus 11 more processes waiting for tasks… executor > local (52) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [5d/3a4f88] NFC…LLER (mysample_15scattered) | 2 of 25 Plus 11 more processes waiting for tasks… executor > local (53) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [64/d5c709] NFC…LLER (mysample_12scattered) | 3 of 25 Plus 11 more processes waiting for tasks… executor > local (54) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [b0/ba93b8] NFC…ALLER (mysample_3scattered) | 4 of 25 Plus 11 more processes waiting for tasks… executor > local (55) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [64/d5c709] NFC…LLER (mysample_12scattered) | 5 of 25 Plus 11 more processes waiting for tasks… executor > local (55) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [64/d5c709] NFC…LLER (mysample_12scattered) | 5 of 25 Plus 11 more processes waiting for tasks… executor > local (56) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [b0/ba93b8] NFC…ALLER (mysample_3scattered) | 6 of 25 Plus 11 more processes waiting for tasks… executor > local (57) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [97/9d4e95] NFC…LLER (mysample_13scattered) | 7 of 25 Plus 11 more processes waiting for tasks… executor > local (57) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [97/9d4e95] NFC…LLER (mysample_13scattered) | 7 of 25 Plus 11 more processes waiting for tasks… executor > local (58) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [db/f71352] NFC…LLER (mysample_14scattered) | 8 of 25 Plus 11 more processes waiting for tasks… executor > local (59) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [45/d5b97c] NFC…LLER (mysample_19scattered) | 9 of 25 Plus 11 more processes waiting for tasks… executor > local (60) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [90/5b4b75] NFC…ALLER (mysample_7scattered) | 10 of 25 Plus 11 more processes waiting for tasks… executor > local (61) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [45/d5b97c] NFC…LLER (mysample_19scattered) | 11 of 25 Plus 11 more processes waiting for tasks… executor > local (61) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [45/d5b97c] NFC…LLER (mysample_19scattered) | 11 of 25 Plus 11 more processes waiting for tasks… executor > local (62) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [e1/12e146] NFC…ALLER (mysample_8scattered) | 11 of 25 Plus 11 more processes waiting for tasks… executor > local (62) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [90/5b4b75] NFC…ALLER (mysample_7scattered) | 12 of 25 Plus 11 more processes waiting for tasks… executor > local (63) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [bd/fd0ac7] NFC…ALLER (mysample_1scattered) | 13 of 25 Plus 11 more processes waiting for tasks… executor > local (64) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [7e/78c5fc] NFC…LLER (mysample_17scattered) | 14 of 25 Plus 11 more processes waiting for tasks… executor > local (65) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [bd/fd0ac7] NFC…ALLER (mysample_1scattered) | 15 of 25 Plus 11 more processes waiting for tasks… executor > local (66) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [7e/78c5fc] NFC…LLER (mysample_17scattered) | 16 of 25 Plus 11 more processes waiting for tasks… executor > local (67) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [02/fb966a] NFC…LLER (mysample_10scattered) | 17 of 25 Plus 11 more processes waiting for tasks… executor > local (68) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [b6/58ab5f] NFC…LLER (mysample_20scattered) | 18 of 25 Plus 11 more processes waiting for tasks… executor > local (69) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [4e/ec8c71] NFC…LLER (mysample_25scattered) | 18 of 25 Plus 11 more processes waiting for tasks… executor > local (69) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [02/fb966a] NFC…LLER (mysample_10scattered) | 19 of 25 Plus 11 more processes waiting for tasks… executor > local (70) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [6f/8b65c1] NFC…LLER (mysample_24scattered) | 19 of 25 Plus 11 more processes waiting for tasks… executor > local (70) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d7/b872d4] NFC…LLER (mysample_18scattered) | 20 of 25 Plus 11 more processes waiting for tasks… executor > local (71) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [4e/ec8c71] NFC…LLER (mysample_25scattered) | 21 of 25 Plus 11 more processes waiting for tasks… executor > local (72) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [e6/0e8d9a] NFC…ALLER (mysample_2scattered) | 22 of 25 Plus 11 more processes waiting for tasks… executor > local (72) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [1e/ea4ab3] NFC…LLER (mysample_22scattered) | 23 of 25 Plus 11 more processes waiting for tasks… executor > local (73) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 23 of 25 Plus 11 more processes waiting for tasks… executor > local (73) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [e6/0e8d9a] NFC…ALLER (mysample_2scattered) | 24 of 25 Plus 11 more processes waiting for tasks… executor > local (73) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ Plus 11 more processes waiting for tasks… executor > local (74) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 0 of 1 Plus 10 more processes waiting for tasks… executor > local (74) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 0 of 1 Plus 10 more processes waiting for tasks… executor > local (74) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ Plus 10 more processes waiting for tasks… executor > local (75) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 0 of 1 Plus 9 more processes waiting for tasks… executor > local (76) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [- ] NFC…AR:GATK4_VARIANTFILTRATION | 0 of 1 Plus 8 more processes waiting for tasks… executor > local (76) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 0 of 1 Plus 8 more processes waiting for tasks… executor > local (76) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 1 of 1 ✔ Plus 8 more processes waiting for tasks… executor > local (76) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 1 of 1 ✔ Plus 8 more processes waiting for tasks… Pulling Singularity image https://depot.galaxyproject.org/singularity/snpeff:5.1--hdfd78af_2 [cache /data/myname/bins/work/singularity/depot.galaxyproject.org-singularity-snpeff-5.1--hdfd78af_2.img] WARN: Singularity cache directory has not been defined -- Remote image will be stored in the path: /data/myname/bins/work/singularity -- Use the environment variable NXF_SINGULARITY_CACHEDIR to specify a different location executor > local (77) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 1 of 1 ✔ [7d/ccd007] NFC…FF:SNPEFF_SNPEFF (mysample) | 0 of 1 Plus 7 more processes waiting for tasks… executor > local (77) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 1 of 1 ✔ [7d/ccd007] NFC…FF:SNPEFF_SNPEFF (mysample) | 0 of 1 Plus 7 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)' Caused by: Process `NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)` terminated with an error exit status (255) Command executed: snpEff \ -Xmx13107M \ Olea_europaea \ -nodownload -canon -v \ -csvStats mysample.haplotypecaller.filtered_snpEff.csv \ -dataDir ${PWD}/data \ mysample.haplotypecaller.filtered.vcf.gz \ > mysample.haplotypecaller.filtered_snpEff.ann.vcf cat <<-END_VERSIONS > versions.yml "NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF": snpeff: $(echo $(snpEff -version 2>&1) | cut -f 2 -d ' ') END_VERSIONS Command exit status: 255 Command output: (empty) Command error: 00:00:00 SnpEff version SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani 00:00:00 Command: 'ann' 00:00:00 Reading configuration file 'snpEff.config'. Genome: 'Olea_europaea' 00:00:00 Reading config file: snpEff.config 00:00:00 Reading config file: /usr/local/share/snpeff-5.1-2/snpEff.config 00:00:00 done 00:00:00 Reading database for genome version 'Olea_europaea' from file 'data/Olea_europaea/snpEffectPredictor.bin' (this might take a while) java.lang.RuntimeException: Database file 'data/Olea_europaea/snpEffectPredictor.bin' is not compatible with this program version: Database version : '5.3' Program version : '5.1' Compatible versions : '[5.1, 5.0]' Try installing the appropriate database. at org.snpeff.serializer.MarkerSerializer.load(MarkerSerializer.java:140) at org.snpeff.snpEffect.SnpEffectPredictor.load(SnpEffectPredictor.java:52) at org.snpeff.snpEffect.Config.loadSnpEffectPredictor(Config.java:680) at org.snpeff.SnpEff.loadDb(SnpEff.java:499) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:890) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:875) at org.snpeff.SnpEff.run(SnpEff.java:1141) at org.snpeff.SnpEff.main(SnpEff.java:160) 00:00:01 Logging 00:00:02 Checking for updates... 00:00:03 Done. Work dir: /data/myname/bins/work/7d/ccd007941d20c19b5a2773c6b2b5c1 Container: /data/myname/bins/work/singularity/depot.galaxyproject.org-singularity-snpeff-5.1--hdfd78af_2.img Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run` -- Check '.nextflow.log' file for details executor > local (77) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 1 of 1 ✔ [7d/ccd007] NFC…FF:SNPEFF_SNPEFF (mysample) | 0 of 1 ✘ Plus 7 more processes waiting for tasks… Execution cancelled -- Finishing pending tasks before exit ERROR ~ Error executing process > 'NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)' Caused by: Process `NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)` terminated with an error exit status (255) Command executed: snpEff \ -Xmx13107M \ Olea_europaea \ -nodownload -canon -v \ -csvStats mysample.haplotypecaller.filtered_snpEff.csv \ -dataDir ${PWD}/data \ mysample.haplotypecaller.filtered.vcf.gz \ > mysample.haplotypecaller.filtered_snpEff.ann.vcf cat <<-END_VERSIONS > versions.yml "NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF": snpeff: $(echo $(snpEff -version 2>&1) | cut -f 2 -d ' ') END_VERSIONS Command exit status: 255 Command output: (empty) Command error: 00:00:00 SnpEff version SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani 00:00:00 Command: 'ann' 00:00:00 Reading configuration file 'snpEff.config'. Genome: 'Olea_europaea' 00:00:00 Reading config file: snpEff.config 00:00:00 Reading config file: /usr/local/share/snpeff-5.1-2/snpEff.config 00:00:00 done 00:00:00 Reading database for genome version 'Olea_europaea' from file 'data/Olea_europaea/snpEffectPredictor.bin' (this might take a while) java.lang.RuntimeException: Database file 'data/Olea_europaea/snpEffectPredictor.bin' is not compatible with this program version: Database version : '5.3' Program version : '5.1' Compatible versions : '[5.1, 5.0]' Try installing the appropriate database. at org.snpeff.serializer.MarkerSerializer.load(MarkerSerializer.java:140) at org.snpeff.snpEffect.SnpEffectPredictor.load(SnpEffectPredictor.java:52) at org.snpeff.snpEffect.Config.loadSnpEffectPredictor(Config.java:680) at org.snpeff.SnpEff.loadDb(SnpEff.java:499) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:890) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:875) at org.snpeff.SnpEff.run(SnpEff.java:1141) at org.snpeff.SnpEff.main(SnpEff.java:160) 00:00:01 Logging 00:00:02 Checking for updates... 00:00:03 Done. Work dir: /data/myname/bins/work/7d/ccd007941d20c19b5a2773c6b2b5c1 Container: /data/myname/bins/work/singularity/depot.galaxyproject.org-singularity-snpeff-5.1--hdfd78af_2.img Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run` -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > local (77) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 1 of 1 ✔ [7d/ccd007] NFC…FF:SNPEFF_SNPEFF (mysample) | 0 of 1 ✘ Plus 7 more processes waiting for tasks… Execution cancelled -- Finishing pending tasks before exit -[nf-core/rnavar] Pipeline completed with errors- ERROR ~ Error executing process > 'NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)' Caused by: Process `NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)` terminated with an error exit status (255) Command executed: snpEff \ -Xmx13107M \ Olea_europaea \ -nodownload -canon -v \ -csvStats mysample.haplotypecaller.filtered_snpEff.csv \ -dataDir ${PWD}/data \ mysample.haplotypecaller.filtered.vcf.gz \ > mysample.haplotypecaller.filtered_snpEff.ann.vcf cat <<-END_VERSIONS > versions.yml "NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF": snpeff: $(echo $(snpEff -version 2>&1) | cut -f 2 -d ' ') END_VERSIONS Command exit status: 255 Command output: (empty) Command error: 00:00:00 SnpEff version SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani 00:00:00 Command: 'ann' 00:00:00 Reading configuration file 'snpEff.config'. Genome: 'Olea_europaea' 00:00:00 Reading config file: snpEff.config 00:00:00 Reading config file: /usr/local/share/snpeff-5.1-2/snpEff.config 00:00:00 done 00:00:00 Reading database for genome version 'Olea_europaea' from file 'data/Olea_europaea/snpEffectPredictor.bin' (this might take a while) java.lang.RuntimeException: Database file 'data/Olea_europaea/snpEffectPredictor.bin' is not compatible with this program version: Database version : '5.3' Program version : '5.1' Compatible versions : '[5.1, 5.0]' Try installing the appropriate database. at org.snpeff.serializer.MarkerSerializer.load(MarkerSerializer.java:140) at org.snpeff.snpEffect.SnpEffectPredictor.load(SnpEffectPredictor.java:52) at org.snpeff.snpEffect.Config.loadSnpEffectPredictor(Config.java:680) at org.snpeff.SnpEff.loadDb(SnpEff.java:499) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:890) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:875) at org.snpeff.SnpEff.run(SnpEff.java:1141) at org.snpeff.SnpEff.main(SnpEff.java:160) 00:00:01 Logging 00:00:02 Checking for updates... 00:00:03 Done. Work dir: /data/myname/bins/work/7d/ccd007941d20c19b5a2773c6b2b5c1 Container: /data/myname/bins/work/singularity/depot.galaxyproject.org-singularity-snpeff-5.1--hdfd78af_2.img Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run` -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > local (77) [- ] NFC…REPARE_GENOME:GUNZIP_FASTA - [29/f30804] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…:PREPARE_GENOME:GUNZIP_GTF - [- ] NFC…VAR:PREPARE_GENOME:GFFREAD - [24/5710a9] NFC…lea_europaea.OLEA9.62.gtf) | 1 of 1 ✔ [98/958a3d] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [3c/f78776] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…NAVAR:PREPARE_GENOME:UNTAR - [ef/1e07fc] NFC…E_GENOME:STAR_INDEXVERSION | 1 of 1 ✔ [9c/c3b2b2] NFC…aea.OLEA9.dna.toplevel.fa) | 1 of 1 ✔ [- ] NFC…E_ALIGNMENT:SAMTOOLS_INDEX - [44/e53fc9] NFC…RNAVAR:CAT_FASTQ (mysample) | 1 of 1 ✔ [f2/b9412b] NFC…AR:RNAVAR:FASTQC (mysample) | 1 of 1 ✔ [12/593b44] NFC…T (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [e0/be5557] NFC…S (Olea_europaea.OLEA9.62) | 1 of 1 ✔ [45/0511cb] NFC…_STAR:STAR_ALIGN (mysample) | 1 of 1 ✔ [75/9fc58c] NFC…ME:SAMTOOLS_SORT (mysample) | 1 of 1 ✔ [47/06dcd4] NFC…E:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [17/3d781d] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [59/a3bba6] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [e3/40a910] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [28/6fdd4e] NFC…D_MARKDUPLICATES (mysample) | 1 of 1 ✔ [0d/4084ff] NFC…D:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [d8/b6db08] NFC…S:SAMTOOLS_STATS (mysample) | 1 of 1 ✔ [da/981daa] NFC…AMTOOLS_FLAGSTAT (mysample) | 1 of 1 ✔ [3c/d6a4e3] NFC…AMTOOLS_IDXSTATS (mysample) | 1 of 1 ✔ [87/19dbc5] NFC…EADS (mysample_25scattered) | 25 of 25 ✔ [8d/844806] NFC…R:SAMTOOLS_MERGE (mysample) | 1 of 1 ✔ [81/2abbb1] NFC…R:SAMTOOLS_INDEX (mysample) | 1 of 1 ✔ [9c/69e42b] NFC…LLER (mysample_21scattered) | 25 of 25 ✔ [f4/5459df] NFC…:GATK4_MERGEVCFS (mysample) | 1 of 1 ✔ [6d/fe6cf8] NFC…VAR:RNAVAR:TABIX (mysample) | 1 of 1 ✔ [37/323f6e] NFC…ARIANTFILTRATION (mysample) | 1 of 1 ✔ [7d/ccd007] NFC…FF:SNPEFF_SNPEFF (mysample) | 0 of 1 ✘ Plus 7 more processes waiting for tasks… Execution cancelled -- Finishing pending tasks before exit -[nf-core/rnavar] Pipeline completed with errors- ERROR ~ Error executing process > 'NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)' Caused by: Process `NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF (mysample)` terminated with an error exit status (255) Command executed: snpEff \ -Xmx13107M \ Olea_europaea \ -nodownload -canon -v \ -csvStats mysample.haplotypecaller.filtered_snpEff.csv \ -dataDir ${PWD}/data \ mysample.haplotypecaller.filtered.vcf.gz \ > mysample.haplotypecaller.filtered_snpEff.ann.vcf cat <<-END_VERSIONS > versions.yml "NFCORE_RNAVAR:RNAVAR:VCF_ANNOTATE_ALL:VCF_ANNOTATE_SNPEFF:SNPEFF_SNPEFF": snpeff: $(echo $(snpEff -version 2>&1) | cut -f 2 -d ' ') END_VERSIONS Command exit status: 255 Command output: (empty) Command error: 00:00:00 SnpEff version SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani 00:00:00 Command: 'ann' 00:00:00 Reading configuration file 'snpEff.config'. Genome: 'Olea_europaea' 00:00:00 Reading config file: snpEff.config 00:00:00 Reading config file: /usr/local/share/snpeff-5.1-2/snpEff.config 00:00:00 done 00:00:00 Reading database for genome version 'Olea_europaea' from file 'data/Olea_europaea/snpEffectPredictor.bin' (this might take a while) java.lang.RuntimeException: Database file 'data/Olea_europaea/snpEffectPredictor.bin' is not compatible with this program version: Database version : '5.3' Program version : '5.1' Compatible versions : '[5.1, 5.0]' Try installing the appropriate database. at org.snpeff.serializer.MarkerSerializer.load(MarkerSerializer.java:140) at org.snpeff.snpEffect.SnpEffectPredictor.load(SnpEffectPredictor.java:52) at org.snpeff.snpEffect.Config.loadSnpEffectPredictor(Config.java:680) at org.snpeff.SnpEff.loadDb(SnpEff.java:499) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:890) at org.snpeff.snpEffect.commandLine.SnpEffCmdEff.run(SnpEffCmdEff.java:875) at org.snpeff.SnpEff.run(SnpEff.java:1141) at org.snpeff.SnpEff.main(SnpEff.java:160) 00:00:01 Logging 00:00:02 Checking for updates... 00:00:03 Done. Work dir: /data/myname/bins/work/7d/ccd007941d20c19b5a2773c6b2b5c1 Container: /data/myname/bins/work/singularity/depot.galaxyproject.org-singularity-snpeff-5.1--hdfd78af_2.img Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run` -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details