Nextflow workflow report

`[lonely_lichterman]`

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 255.

The full error message was:

Error executing process > 'NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:MAGECK_TEST (control_treatment)'

Caused by:
  Process `NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:MAGECK_TEST (control_treatment)` terminated with an error exit status (255)


Command executed:

  mageck  \
      test \
       \
      -t control \
      -c treatment \
      -k count_table.count.txt \
      -n control_treatment
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:MAGECK_TEST":
      mageck: $(mageck -v)
  END_VERSIONS

Command exit status:
  255

Command output:
  (empty)

Command error:
  INFO  @ Wed, 13 Nov 2024 01:23:47: Parameters: /usr/local/bin/mageck test -t control -c treatment -k count_table.count.txt -n control_treatment 
  INFO  @ Wed, 13 Nov 2024 01:23:47: Welcome to MAGeCK v0.5.9.5. Command: test 
  INFO  @ Wed, 13 Nov 2024 01:23:47: Loading count table from count_table.count.txt  
  INFO  @ Wed, 13 Nov 2024 01:23:47: Processing 1 lines.. 
  ERROR @ Wed, 13 Nov 2024 01:23:47: Error: incorrect number of dimensions in line 2 (4) compared with the header line (2). Please double-check your read count table file. 

Work dir:
  /home/dbeck/estorage/data/collaboration/charles_debock/2024_Yashna/testdata/work/28/cd462dcd5d3de63b93f97c36f01124

Container:
  quay.io/biocontainers/mageck:0.5.9.5--py39h1f90b4d_3

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line

Run times

13-Nov-2024 12:23:19 - 13-Nov-2024 12:23:54 (duration: 35.2s)

5 succeeded

0 cached

0 ignored

1 failed

Nextflow command

nextflow run nf-core/crisprseq --analysis screening --input samplesheet_test2.csv --library brunello_target_sequence.txt --contrasts rra_contrasts.txt --rra --outdir test_paird_rra -profile docker

CPU-Hours: 0.1 (1.1% failed)
Launch directory: /home/dbeck/estorage/data/collaboration/charles_debock/2024_Yashna/testdata
Work directory: /home/dbeck/estorage/data/collaboration/charles_debock/2024_Yashna/testdata/work
Project directory: /home/dbeck/.nextflow/assets/nf-core/crisprseq
Script name: main.nf
Script ID: 1c49ac2264fab5af8fcf1ad1ed001365
Workflow session: 3aff210f-9f35-49c9-8b11-2ed5455a51a6
Workflow repository: https://github.com/nf-core/crisprseq, revision master (commit hash 0e9f915c4a3c89d02a66ec58e2decbc832323c8b)
Workflow profile: docker
Nextflow version: version 24.10.0, build 5928 (27-10-2024 18:36 UTC)

Nextflow workflow report

`[lonely_lichterman]`

Workflow execution completed unsuccessfully!

Resource Usage

CPU

Memory

Job Duration

I/O

Tasks