Nextflow workflow report

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 1.

The full error message was:

Error executing process > 'NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:BAGEL2_BF (ALL-54_Dexamethasone_ALL-54_Saline)'

Caused by:
  Process `NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:BAGEL2_BF (ALL-54_Dexamethasone_ALL-54_Saline)` terminated with an error exit status (1)


Command executed:

  BAGEL.py bf -i ALL-54_Dexamethasone_vs_ALL-54_Saline.foldchange -o 'ALL-54_Dexamethasone_vs_ALL-54_Saline.bf'  -e CEGv2.txt -n NEGv1.txt -c ALL-54_Dexamethasone
  
  cat <<-END_VERSIONS > versions.yml
  "NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:BAGEL2_BF":
      python: $(python --version | sed 's/Python //g')
      BAGEL2: $( BAGEL.py version | grep -o 'Version: [0-9.]*' | awk '{print  $2}' | grep -v '^$')
  END_VERSIONS

Command exit status:
  1

Command output:
  Using column:  ALL-54_Dexamethasone
  Number of unique genes:  101
  Number of reference essentials: 685
  Number of reference nonessentials: 929
  Iter TrainEss TrainNon TestSet
  0 0 0 11

Command error:
  Using column:  ALL-54_Dexamethasone
  Number of unique genes:  101
  Number of reference essentials: 685
  Number of reference nonessentials: 929
  Iter TrainEss TrainNon TestSet
  0 0 0 11
  Traceback (most recent call last):
    File "/home/dbeck/.nextflow/assets/nf-core/crisprseq/bin/BAGEL.py", line 1262, in 
      bagel()
    File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1157, in __call__
      return self.main(*args, **kwargs)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1078, in main
      rv = self.invoke(ctx)
           ^^^^^^^^^^^^^^^^
    File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1688, in invoke
      return _process_result(sub_ctx.command.invoke(sub_ctx))
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/usr/local/lib/python3.11/site-packages/click/core.py", line 1434, in invoke
      return ctx.invoke(self.callback, **ctx.params)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/usr/local/lib/python3.11/site-packages/click/core.py", line 783, in invoke
      return __callback(*args, **kwargs)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/home/dbeck/.nextflow/assets/nf-core/crisprseq/bin/BAGEL.py", line 744, in calculate_bayes_factors
      kess = stats.gaussian_kde(ess_train_fc_flat_list)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
    File "/usr/local/lib/python3.11/site-packages/scipy/stats/_kde.py", line 199, in __init__
      raise ValueError("`dataset` input should have multiple elements.")
  ValueError: `dataset` input should have multiple elements.

Work dir:
  /home/dbeck/estorage/data/collaboration/charles_debock/2024_Yashna/screen_2/work/cf/02411747dda16dc59b15d1b71294a6

Container:
  quay.io/biocontainers/mulled-v2-1ec3f69e7819b1ab3e6f57d16594eb40ed7d6792:f94a27287a1921ce0dacd411d48acff738d3ca90-0

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`