nf-core modules test nasvar/pipeline --verbose --profile docker ,--./,-. ___ __ __ __ ___ /,-._.--~\ |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/tools version 4.0.2 - https://nf-co.re INFO Generating nf-test snapshot Displaying nf-test output ╭────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── nf-test output ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮ │ │ │ 🚀 nf-test 0.9.5 │ │ https://www.nf-test.com │ │ Please cite: https://doi.org/10.1093/gigascience/giaf130 │ │ (c) 2021 - 2026 Lukas Forer and Sebastian Schoenherr │ │ │ │ Load .nf-test/plugins/nft-anndata/0.4.1/nft-anndata-0.4.1.jar │ │ Load .nf-test/plugins/nft-bam/0.6.1/nft-bam-0.6.1.jar │ │ Load .nf-test/plugins/nft-csv/0.1.0/nft-csv-0.1.0.jar │ │ Load .nf-test/plugins/nft-compress/0.1.0/nft-compress-0.1.0.jar │ │ Load .nf-test/plugins/nft-fastq/0.1.0/nft-fastq-0.1.0.jar │ │ Load .nf-test/plugins/nft-utils/0.0.9/nft-utils-0.0.9.jar │ │ Load .nf-test/plugins/nft-vcf/1.0.7/nft-vcf-1.0.7.jar │ │ │ │ Test Process NASVAR_PIPELINE │ │ │ │ Test [f427fc01] 'nasvar pipeline - bam - RUNX1::ETV6' │ │ │ │ Profiles: [docker] │ │ Configs: [tests/config/nf-test.config] │ │ Command: /Users/k.v.cammel/.local/bin/nextflow -log /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/meta/nextflow.log run │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-f427fc01d6706a560b6779545a496080.nf -c /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/tests/config/nf-test.config -params-file │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/meta/params.json -ansi-log false -profile docker -with-trace │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/meta/trace.csv -w /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work │ │ > Nextflow 26.04.3 is available - Please consider updating your version to it │ │ > N E X T F L O W ~ version 26.04.0 │ │ > Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-f427fc01d6706a560b6779545a496080.nf` [angry_panini] - revision: 69d907beb3 │ │ > [60/bbe5f1] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stdout: │ │ N E X T F L O W ~ version 26.04.0 │ │ Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-f427fc01d6706a560b6779545a496080.nf` [angry_panini] - revision: 69d907beb3 │ │ [60/bbe5f1] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stderr: │ │ Nextflow 26.04.3 is available - Please consider updating your version to it │ │ │ │ Nextflow Output: │ │ N E X T F L O W ~ version 26.04.0 │ │ Enabled plugins: [] │ │ Disabled plugins: [] │ │ PF4J version 3.14.1 in 'deployment' mode │ │ No plugins │ │ revision: 69d907beb3 │ │ [60/bbe5f1] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Output Channels: │ │ { │ │ "0": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.result.json" │ │ ] │ │ ], │ │ "1": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.coverage.tsv" │ │ ] │ │ ], │ │ "10": [ │ │ │ │ ], │ │ "11": [ │ │ │ │ ], │ │ "12": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.gc_vs_coverage.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.gc_vs_coverage.svg" │ │ ] │ │ ] │ │ ], │ │ "13": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.chr21_RUNX1_covg.svg" │ │ ] │ │ ], │ │ "14": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "2": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.maf" │ │ ] │ │ ], │ │ "3": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test_nasvar.log" │ │ ] │ │ ], │ │ "4": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.report.md" │ │ ] │ │ ], │ │ "5": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.report.html" │ │ ] │ │ ], │ │ "6": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.nasvar.zip" │ │ ] │ │ ], │ │ "7": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.karyotype.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.karyotype.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.karyotype_baf.gc_corrected.svg" │ │ ] │ │ ] │ │ ], │ │ "8": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.coverage.gc_adjusted.tsv" │ │ ] │ │ ], │ │ "9": [ │ │ │ │ ], │ │ "RUNX1_svg": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.chr21_RUNX1_covg.svg" │ │ ] │ │ ], │ │ "breakpoints": [ │ │ │ │ ], │ │ "coverage": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.coverage.tsv" │ │ ] │ │ ], │ │ "coverage_gc_adjusted": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.coverage.gc_adjusted.tsv" │ │ ] │ │ ], │ │ "diagnostic": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.gc_vs_coverage.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.gc_vs_coverage.svg" │ │ ] │ │ ] │ │ ], │ │ "html": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.report.html" │ │ ] │ │ ], │ │ "json": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.result.json" │ │ ] │ │ ], │ │ "karyotype_svg": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.karyotype.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.karyotype.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.karyotype_baf.gc_corrected.svg" │ │ ] │ │ ] │ │ ], │ │ "log": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test_nasvar.log" │ │ ] │ │ ], │ │ "maf": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.maf" │ │ ] │ │ ], │ │ "markdown": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.report.md" │ │ ] │ │ ], │ │ "slice_bam": [ │ │ │ │ ], │ │ "slice_fa": [ │ │ │ │ ], │ │ "versions_nasvar": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "zip": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/60/bbe5f13491d4428d3bc1af442153d1/test.nasvar.zip" │ │ ] │ │ ] │ │ } │ │ Topic Channels: │ │ { │ │ │ │ } │ │ PASSED (135.964s) │ │ Test [e96eaa29] 'sarscov2 - bam - stub' │ │ │ │ Profiles: [docker] │ │ Configs: [tests/config/nf-test.config] │ │ Command: /Users/k.v.cammel/.local/bin/nextflow -log /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/meta/nextflow.log run │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-e96eaa2919482a0a0796b00e773fdbf9.nf -c /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/tests/config/nf-test.config -params-file │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/meta/params.json -ansi-log false -profile docker -with-trace │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/meta/trace.csv -w /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work │ │ -stub │ │ > Nextflow 26.04.3 is available - Please consider updating your version to it │ │ > N E X T F L O W ~ version 26.04.0 │ │ > Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-e96eaa2919482a0a0796b00e773fdbf9.nf` [loving_leakey] - revision: c19d145531 │ │ > [42/2f00e3] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stdout: │ │ N E X T F L O W ~ version 26.04.0 │ │ Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-e96eaa2919482a0a0796b00e773fdbf9.nf` [loving_leakey] - revision: c19d145531 │ │ [42/2f00e3] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stderr: │ │ Nextflow 26.04.3 is available - Please consider updating your version to it │ │ │ │ Nextflow Output: │ │ N E X T F L O W ~ version 26.04.0 │ │ Enabled plugins: [] │ │ Disabled plugins: [] │ │ PF4J version 3.14.1 in 'deployment' mode │ │ No plugins │ │ revision: c19d145531 │ │ [42/2f00e3] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Output Channels: │ │ { │ │ "0": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.result.json" │ │ ] │ │ ], │ │ "1": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.coverage.tsv" │ │ ] │ │ ], │ │ "10": [ │ │ │ │ ], │ │ "11": [ │ │ │ │ ], │ │ "12": [ │ │ │ │ ], │ │ "13": [ │ │ │ │ ], │ │ "14": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "2": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.maf" │ │ ] │ │ ], │ │ "3": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test_nasvar.log" │ │ ] │ │ ], │ │ "4": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.report.md" │ │ ] │ │ ], │ │ "5": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.report.html" │ │ ] │ │ ], │ │ "6": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.nasvar.zip" │ │ ] │ │ ], │ │ "7": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.karyotype.svg" │ │ ] │ │ ], │ │ "8": [ │ │ │ │ ], │ │ "9": [ │ │ │ │ ], │ │ "RUNX1_svg": [ │ │ │ │ ], │ │ "breakpoints": [ │ │ │ │ ], │ │ "coverage": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.coverage.tsv" │ │ ] │ │ ], │ │ "coverage_gc_adjusted": [ │ │ │ │ ], │ │ "diagnostic": [ │ │ │ │ ], │ │ "html": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.report.html" │ │ ] │ │ ], │ │ "json": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.result.json" │ │ ] │ │ ], │ │ "karyotype_svg": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.karyotype.svg" │ │ ] │ │ ], │ │ "log": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test_nasvar.log" │ │ ] │ │ ], │ │ "maf": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.maf" │ │ ] │ │ ], │ │ "markdown": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.report.md" │ │ ] │ │ ], │ │ "slice_bam": [ │ │ │ │ ], │ │ "slice_fa": [ │ │ │ │ ], │ │ "versions_nasvar": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "zip": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/42/2f00e3592b6a2bdbe1a9472abdea91/test.nasvar.zip" │ │ ] │ │ ] │ │ } │ │ Topic Channels: │ │ { │ │ │ │ } │ │ PASSED (3.126s) │ │ │ │ │ │ SUCCESS: Executed 2 tests in 139.14s │ │ │ │ │ ╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯ Displaying nf-test error INFO Generating nf-test snapshot again to check stability Displaying nf-test output ╭────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── nf-test output ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮ │ │ │ 🚀 nf-test 0.9.5 │ │ https://www.nf-test.com │ │ Please cite: https://doi.org/10.1093/gigascience/giaf130 │ │ (c) 2021 - 2026 Lukas Forer and Sebastian Schoenherr │ │ │ │ Load .nf-test/plugins/nft-anndata/0.4.1/nft-anndata-0.4.1.jar │ │ Load .nf-test/plugins/nft-bam/0.6.1/nft-bam-0.6.1.jar │ │ Load .nf-test/plugins/nft-csv/0.1.0/nft-csv-0.1.0.jar │ │ Load .nf-test/plugins/nft-compress/0.1.0/nft-compress-0.1.0.jar │ │ Load .nf-test/plugins/nft-fastq/0.1.0/nft-fastq-0.1.0.jar │ │ Load .nf-test/plugins/nft-utils/0.0.9/nft-utils-0.0.9.jar │ │ Load .nf-test/plugins/nft-vcf/1.0.7/nft-vcf-1.0.7.jar │ │ │ │ Test Process NASVAR_PIPELINE │ │ │ │ Test [f427fc01] 'nasvar pipeline - bam - RUNX1::ETV6' │ │ │ │ Profiles: [docker] │ │ Configs: [tests/config/nf-test.config] │ │ Command: /Users/k.v.cammel/.local/bin/nextflow -log /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/meta/nextflow.log run │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-f427fc01d6706a560b6779545a496080.nf -c /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/tests/config/nf-test.config -params-file │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/meta/params.json -ansi-log false -profile docker -with-trace │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/meta/trace.csv -w /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work │ │ > Nextflow 26.04.3 is available - Please consider updating your version to it │ │ > N E X T F L O W ~ version 26.04.0 │ │ > Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-f427fc01d6706a560b6779545a496080.nf` [distraught_kowalevski] - revision: 69d907beb3 │ │ > [c9/0b4046] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stdout: │ │ N E X T F L O W ~ version 26.04.0 │ │ Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-f427fc01d6706a560b6779545a496080.nf` [distraught_kowalevski] - revision: 69d907beb3 │ │ [c9/0b4046] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stderr: │ │ Nextflow 26.04.3 is available - Please consider updating your version to it │ │ │ │ Nextflow Output: │ │ N E X T F L O W ~ version 26.04.0 │ │ Enabled plugins: [] │ │ Disabled plugins: [] │ │ PF4J version 3.14.1 in 'deployment' mode │ │ No plugins │ │ revision: 69d907beb3 │ │ [c9/0b4046] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Output Channels: │ │ { │ │ "0": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.result.json" │ │ ] │ │ ], │ │ "1": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.coverage.tsv" │ │ ] │ │ ], │ │ "10": [ │ │ │ │ ], │ │ "11": [ │ │ │ │ ], │ │ "12": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.gc_vs_coverage.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.gc_vs_coverage.svg" │ │ ] │ │ ] │ │ ], │ │ "13": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.chr21_RUNX1_covg.svg" │ │ ] │ │ ], │ │ "14": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "2": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.maf" │ │ ] │ │ ], │ │ "3": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test_nasvar.log" │ │ ] │ │ ], │ │ "4": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.report.md" │ │ ] │ │ ], │ │ "5": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.report.html" │ │ ] │ │ ], │ │ "6": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.nasvar.zip" │ │ ] │ │ ], │ │ "7": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.karyotype.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.karyotype.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.karyotype_baf.gc_corrected.svg" │ │ ] │ │ ] │ │ ], │ │ "8": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.coverage.gc_adjusted.tsv" │ │ ] │ │ ], │ │ "9": [ │ │ │ │ ], │ │ "RUNX1_svg": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.chr21_RUNX1_covg.svg" │ │ ] │ │ ], │ │ "breakpoints": [ │ │ │ │ ], │ │ "coverage": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.coverage.tsv" │ │ ] │ │ ], │ │ "coverage_gc_adjusted": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.coverage.gc_adjusted.tsv" │ │ ] │ │ ], │ │ "diagnostic": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.gc_vs_coverage.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.gc_vs_coverage.svg" │ │ ] │ │ ] │ │ ], │ │ "html": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.report.html" │ │ ] │ │ ], │ │ "json": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.result.json" │ │ ] │ │ ], │ │ "karyotype_svg": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ [ │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.karyotype.gc_corrected.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.karyotype.svg", │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.karyotype_baf.gc_corrected.svg" │ │ ] │ │ ] │ │ ], │ │ "log": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test_nasvar.log" │ │ ] │ │ ], │ │ "maf": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.maf" │ │ ] │ │ ], │ │ "markdown": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.report.md" │ │ ] │ │ ], │ │ "slice_bam": [ │ │ │ │ ], │ │ "slice_fa": [ │ │ │ │ ], │ │ "versions_nasvar": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "zip": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/f427fc01d6706a560b6779545a496080/work/c9/0b404612e124a98939657bb38072e4/test.nasvar.zip" │ │ ] │ │ ] │ │ } │ │ Topic Channels: │ │ { │ │ │ │ } │ │ PASSED (140.837s) │ │ Test [e96eaa29] 'sarscov2 - bam - stub' │ │ │ │ Profiles: [docker] │ │ Configs: [tests/config/nf-test.config] │ │ Command: /Users/k.v.cammel/.local/bin/nextflow -log /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/meta/nextflow.log run │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-e96eaa2919482a0a0796b00e773fdbf9.nf -c /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/tests/config/nf-test.config -params-file │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/meta/params.json -ansi-log false -profile docker -with-trace │ │ /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/meta/trace.csv -w /Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work │ │ -stub │ │ > Nextflow 26.04.3 is available - Please consider updating your version to it │ │ > N E X T F L O W ~ version 26.04.0 │ │ > Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-e96eaa2919482a0a0796b00e773fdbf9.nf` [wise_pare] - revision: c19d145531 │ │ > [db/9db0d9] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stdout: │ │ N E X T F L O W ~ version 26.04.0 │ │ Launching `/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test-e96eaa2919482a0a0796b00e773fdbf9.nf` [wise_pare] - revision: c19d145531 │ │ [db/9db0d9] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Stderr: │ │ Nextflow 26.04.3 is available - Please consider updating your version to it │ │ │ │ Nextflow Output: │ │ N E X T F L O W ~ version 26.04.0 │ │ Enabled plugins: [] │ │ Disabled plugins: [] │ │ PF4J version 3.14.1 in 'deployment' mode │ │ No plugins │ │ revision: c19d145531 │ │ [db/9db0d9] Submitted process > NASVAR_PIPELINE (test) │ │ │ │ Output Channels: │ │ { │ │ "0": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.result.json" │ │ ] │ │ ], │ │ "1": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.coverage.tsv" │ │ ] │ │ ], │ │ "10": [ │ │ │ │ ], │ │ "11": [ │ │ │ │ ], │ │ "12": [ │ │ │ │ ], │ │ "13": [ │ │ │ │ ], │ │ "14": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "2": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.maf" │ │ ] │ │ ], │ │ "3": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test_nasvar.log" │ │ ] │ │ ], │ │ "4": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.report.md" │ │ ] │ │ ], │ │ "5": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.report.html" │ │ ] │ │ ], │ │ "6": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.nasvar.zip" │ │ ] │ │ ], │ │ "7": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.karyotype.svg" │ │ ] │ │ ], │ │ "8": [ │ │ │ │ ], │ │ "9": [ │ │ │ │ ], │ │ "RUNX1_svg": [ │ │ │ │ ], │ │ "breakpoints": [ │ │ │ │ ], │ │ "coverage": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.coverage.tsv" │ │ ] │ │ ], │ │ "coverage_gc_adjusted": [ │ │ │ │ ], │ │ "diagnostic": [ │ │ │ │ ], │ │ "html": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.report.html" │ │ ] │ │ ], │ │ "json": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.result.json" │ │ ] │ │ ], │ │ "karyotype_svg": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.karyotype.svg" │ │ ] │ │ ], │ │ "log": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test_nasvar.log" │ │ ] │ │ ], │ │ "maf": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.maf" │ │ ] │ │ ], │ │ "markdown": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.report.md" │ │ ] │ │ ], │ │ "slice_bam": [ │ │ │ │ ], │ │ "slice_fa": [ │ │ │ │ ], │ │ "versions_nasvar": [ │ │ [ │ │ "NASVAR_PIPELINE", │ │ "nasvar", │ │ "nasvar 1.1.0" │ │ ] │ │ ], │ │ "zip": [ │ │ [ │ │ { │ │ "id": "test" │ │ }, │ │ "/Users/k.v.cammel/Documents/Projects/Leukemia/nasvar_docker/nasvar_nextflow/modules/.nf-test/tests/e96eaa2919482a0a0796b00e773fdbf9/work/db/9db0d9ff586a6b1076a75a2d7c08bb/test.nasvar.zip" │ │ ] │ │ ] │ │ } │ │ Topic Channels: │ │ { │ │ │ │ } │ │ PASSED (3.847s) │ │ │ │ │ │ SUCCESS: Executed 2 tests in 144.753s │ │ │ │ │ ╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯ Displaying nf-test error CRITICAL Ran, but found errors: - nf-test failed - nf-test failed