N E X T F L O W ~ version 25.10.0 Launching `https://github.com/nf-core/mag` [wise_ochoa] DSL2 - revision: 99859fc04c [main] ------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/mag 5.2.0 ------------------------------------------------------ Input/output options input : samplesheet.csv outdir : mag_out Generic options trace_report_suffix : 2025-12-02_14-45-54 Taxonomic profiling options gtdb_db : /z/datasets/ds_mr_metagenome/nfcore_pipelines/data/gtdbtk_r226_data.tar.gz gtdbtk_min_completeness : 50.0 gtdbtk_max_contamination: 10.0 Binning options skip_metabinner : true Core Nextflow options revision : main runName : wise_ochoa containerEngine : singularity launchDir : /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm workDir : /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work projectDir : /z/home/pbo/.nextflow/assets/nf-core/mag userName : pbo profile : sge,singularity configFiles : /z/home/pbo/.nextflow/assets/nf-core/mag/nextflow.config, /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/nextflow.config !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------ * The pipeline https://doi.org/10.1093/nargab/lqac007 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/mag/blob/main/CITATIONS.md [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - Plus 6 more processes waiting for tasks… [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - Plus 12 more processes waiting for tasks… [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - Plus 15 more processes waiting for tasks… [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - Plus 16 more processes waiting for tasks… [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (1) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW [ 0%] 0 of 4 [ae/1888dd] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (3) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [35/297205] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample4) [ 0%] 0 of 4 [f8/7fdb7d] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (4) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [1d/dff9f8] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample3) [ 0%] 0 of 4 [f8/7fdb7d] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (5) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [ 0%] 0 of 4 [f8/7fdb7d] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (6) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [ 0%] 0 of 4 [67/eefdc8] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample4) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (7) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [ 0%] 0 of 4 [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (9) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [b7/8c9e96] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample1) [ 0%] 0 of 4 [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (9) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [b7/8c9e96] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample1) [ 0%] 0 of 4 [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (9) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [1d/dff9f8] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample3) [ 50%] 2 of 4 [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (9) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [b7/8c9e96] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample1) [ 75%] 3 of 4 [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (9) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (9) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [67/eefdc8] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (10) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [67/eefdc8] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample4) [ 25%] 1 of 4 [16/4c0702] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (10) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [67/eefdc8] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample4) [ 25%] 1 of 4 [16/4c0702] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (10) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [ae/1888dd] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample1) [ 50%] 2 of 4 [16/4c0702] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (11) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [ae/1888dd] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample1) [ 50%] 2 of 4 [ae/570106] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample1) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (11) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [ae/1888dd] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample1) [ 50%] 2 of 4 [ae/570106] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample1) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (11) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [f8/7fdb7d] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample2) [ 75%] 3 of 4 [ae/570106] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample1) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (12) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [f8/7fdb7d] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample2) [ 75%] 3 of 4 [ec/065740] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (12) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [f8/7fdb7d] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample2) [ 75%] 3 of 4 [ec/065740] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (12) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [f8/7fdb7d] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample2) [ 75%] 3 of 4 [16/4c0702] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample4) [ 33%] 1 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (12) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [16/4c0702] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (13) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (13) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (13) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [ae/570106] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample1) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (13) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [ec/065740] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (13) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (14) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [ed/970960] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (15) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (17) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [05/84f2ef] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (17) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [05/84f2ef] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED - [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (17) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [13/7defbf] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (18) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [13/7defbf] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample4) [ 25%] 1 of 4 [2c/b4cec9] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (18) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [13/7defbf] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample4) [ 25%] 1 of 4 [2c/b4cec9] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (18) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [ed/970960] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample3) [ 50%] 2 of 4 [2c/b4cec9] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (19) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [ed/970960] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample3) [ 50%] 2 of 4 [a1/282f34] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (19) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [ed/970960] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample3) [ 50%] 2 of 4 [a1/282f34] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (19) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [ed/970960] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample3) [ 50%] 2 of 4 [2c/b4cec9] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample4) [ 50%] 1 of 2 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (19) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [05/84f2ef] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample1) [ 75%] 3 of 4 [2c/b4cec9] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample4) [ 33%] 1 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (20) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [05/84f2ef] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample1) [ 75%] 3 of 4 [b1/f72cbe] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample1) [ 33%] 1 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (20) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [05/84f2ef] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample1) [ 75%] 3 of 4 [b1/f72cbe] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample1) [ 33%] 1 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (20) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [05/84f2ef] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample1) [ 75%] 3 of 4 [a1/282f34] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample3) [ 66%] 2 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (20) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [05/84f2ef] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample1) [ 75%] 3 of 4 [b1/f72cbe] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample1) [100%] 3 of 3 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (20) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [b1/f72cbe] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample1) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (21) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (22) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (23) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [- ] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (24) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (25) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [32/32d65a] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample3) [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (27) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (28) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (29) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (29) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (29) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (29) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [ 0%] 0 of 1 Plus 15 more processes waiting for tasks… executor > sge (29) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (29) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (30) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:QUAST - [- ] NFCORE_MAG:MAG:PRODIGAL - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (30) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [- ] NFCORE_MAG:MAG:QUAST [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:PRODIGAL [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (31) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [- ] NFCORE_MAG:MAG:QUAST [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:PRODIGAL [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (33) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 0%] 0 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (33) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 0%] 0 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (33) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 0%] 0 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (34) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 0%] 0 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [d9/d13fc2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (35) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 0%] 0 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [0d/0505a7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 0%] 0 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 0%] 0 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [8f/be41d2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [d9/d13fc2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [0d/0505a7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e0/f9a8f2] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [100%] 1 of 1 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [100%] 4 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (37) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [eb/cecee1] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample4.contigs.fasta.gz) [ 50%] 1 of 2 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [100%] 4 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (38) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [ 50%] 1 of 2 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [100%] 4 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (38) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [ 50%] 1 of 2 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [100%] 1 of 1 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [100%] 1 of 1 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [100%] 4 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (38) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [9c/fd4d59] NFCORE_MAG:MAG:QUAST (METAMDBG-sample4) [ 50%] 1 of 2 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [3d/eb1ae9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (1) [ 50%] 1 of 2 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [100%] 4 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (40) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 50%] 1 of 2 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [ 50%] 1 of 2 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [100%] 4 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (41) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 50%] 1 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [ 50%] 1 of 2 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [100%] 4 of 4 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (41) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 50%] 1 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [43/e38864] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (42) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 50%] 1 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [fc/68cb1d] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (44) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 50%] 1 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [07/630631] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (45) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 50%] 1 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (45) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 50%] 1 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (45) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [cd/19adef] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [100%] 2 of 2 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [100%] 2 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (45) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [91/a287a7] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample3.contigs.fasta.gz) [ 66%] 2 of 3 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [100%] 2 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (46) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [ce/943f18] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample2.contigs.fasta.gz) [ 66%] 2 of 3 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [100%] 2 of 2 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [100%] 2 of 2 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (46) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [ce/943f18] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample2.contigs.fasta.gz) [100%] 3 of 3 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 66%] 2 of 3 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [73/e1e4f9] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (2) [ 66%] 2 of 3 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (47) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [ce/943f18] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample2.contigs.fasta.gz) [100%] 3 of 3 [bb/be189d] NFCORE_MAG:MAG:QUAST (METAMDBG-sample3) [ 66%] 2 of 3 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [ 66%] 2 of 3 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (49) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [15/abf53b] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample2) [ 75%] 3 of 4 [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [ce/943f18] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample2.contigs.fasta.gz) [100%] 3 of 3 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 66%] 2 of 3 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [ 66%] 2 of 3 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (49) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [ce/943f18] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample2.contigs.fasta.gz) [ 75%] 3 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 66%] 2 of 3 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [ 66%] 2 of 3 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (50) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [ 75%] 3 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 66%] 2 of 3 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [ 66%] 2 of 3 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (50) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [ 75%] 3 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 66%] 2 of 3 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [100%] 3 of 3 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (51) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [ 75%] 3 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 66%] 2 of 3 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [100%] 3 of 3 [3c/dcca11] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (52) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [ 75%] 3 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 66%] 2 of 3 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [100%] 3 of 3 [30/675d8a] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (54) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [ 75%] 3 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 66%] 2 of 3 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [100%] 3 of 3 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (54) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 50%] 2 of 4 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [ 75%] 3 of 4 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (55) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [b2/5b1d0f] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (3) [ 75%] 3 of 4 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (56) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [ 75%] 3 of 4 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (57) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [ 75%] 3 of 4 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (57) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [ 75%] 3 of 4 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 33%] 4 of 12 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (57) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 25%] 4 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (58) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 25%] 4 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (60) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [96/371ce9] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 25%] 4 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [99/4d983b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 25%] 4 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 50%] 2 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [99/4d983b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 25%] 4 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 75%] 3 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [99/4d983b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 25%] 4 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [b7/494cc8] NFCORE_MAG:MAG:QUAST (METAMDBG-sample2) [ 75%] 3 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [fc/68cb1d] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 31%] 5 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [fc/68cb1d] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 31%] 5 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [22/94ac1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 37%] 6 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [07/630631] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 43%] 7 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [f7/de3527] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 50%] 8 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [f1/127761] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 56%] 9 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [f5/c64c21] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 62%] 10 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [3c/dcca11] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 68%] 11 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [3c/dcca11] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 68%] 11 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [1e/13b72a] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 81%] 13 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [96/371ce9] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 87%] 14 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [72/37e3de] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 25%] 1 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 0%] 0 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [100%] 4 of 4 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (61) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [32/32d65a] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample3) [ 25%] 1 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [cb/50db0b] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (METAMDBG-sample1.contigs.fasta.gz) [ 80%] 4 of 5 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (62) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [32/32d65a] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample3) [ 25%] 1 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [62/e1d7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample3.assembly.fasta.gz) [ 80%] 4 of 5 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (62) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [32/32d65a] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample3) [ 25%] 1 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [62/e1d7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample3.assembly.fasta.gz) [ 80%] 4 of 5 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [100%] 4 of 4 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 50%] 2 of 4 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [100%] 4 of 4 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (62) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [32/32d65a] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample3) [ 25%] 1 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [62/e1d7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample3.assembly.fasta.gz) [100%] 5 of 5 [de/15f2c7] NFCORE_MAG:MAG:QUAST (METAMDBG-sample1) [ 80%] 4 of 5 [09/25d6a0] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [ 80%] 4 of 5 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (64) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [32/32d65a] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample3) [ 25%] 1 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [62/e1d7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample3.assembly.fasta.gz) [100%] 5 of 5 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [8b/39896c] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (4) [ 80%] 4 of 5 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (65) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [32/32d65a] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample3) [ 25%] 1 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [62/e1d7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample3.assembly.fasta.gz) [100%] 5 of 5 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [ 80%] 4 of 5 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (65) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [62/e1d7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample3.assembly.fasta.gz) [ 83%] 5 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [ 80%] 4 of 5 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (66) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [ 83%] 5 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [ 80%] 4 of 5 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (66) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [ 83%] 5 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [ 80%] 4 of 5 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 16 of 16 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (66) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [ 83%] 5 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [100%] 5 of 5 [b7/5fb843] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (67) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [ 83%] 5 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [100%] 5 of 5 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (69) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [ 83%] 5 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [100%] 5 of 5 [9e/09c165] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (70) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [ 83%] 5 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 80%] 4 of 5 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 40%] 2 of 5 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [100%] 5 of 5 [3a/1bb7f7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (70) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 66%] 4 of 6 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [ 83%] 5 of 6 [3a/1bb7f7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (71) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [ 83%] 5 of 6 [3a/1bb7f7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (72) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [d4/522f93] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (5) [ 83%] 5 of 6 [3a/1bb7f7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (73) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [ 83%] 5 of 6 [3a/1bb7f7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 80%] 16 of 20 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (73) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [3a/1bb7f7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (74) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [43/ff3b1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (75) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [44/5bbedc] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [71/11aca2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 66%] 4 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [71/11aca2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 83%] 5 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [71/11aca2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 83%] 5 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [71/11aca2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 83%] 5 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [71/11aca2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 66%] 16 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [8e/7ac5a0] NFCORE_MAG:MAG:QUAST (FLYE-sample3) [ 83%] 5 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [41/605a6e] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample4) [ 50%] 2 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (77) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [67/77ad41] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample4.assembly.fasta.gz) [100%] 6 of 6 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (78) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [ 85%] 6 of 7 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (78) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [ 85%] 6 of 7 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (78) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [ 85%] 6 of 7 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [100%] 6 of 6 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 33%] 2 of 6 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [100%] 6 of 6 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (78) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [0e/d97a33] NFCORE_MAG:MAG:QUAST (FLYE-sample4) [ 85%] 6 of 7 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [ 85%] 6 of 7 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (79) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [2f/ad4202] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (6) [ 85%] 6 of 7 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (81) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [ 85%] 6 of 7 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (81) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [ 85%] 6 of 7 [30/18ee1e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 70%] 17 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (81) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [ 85%] 6 of 7 [9e/09c165] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 75%] 18 of 24 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (81) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [9e/09c165] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (82) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [e9/bedaa5] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (83) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [5e/123bb7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 85%] 6 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [5b/084f6c] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 67%] 19 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [11/45a7fa] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 71%] 20 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [11/45a7fa] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 71%] 20 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [44/5bbedc] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 75%] 21 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [3a/1bb7f7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample3) [ 78%] 22 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [43/ff3b1b] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 28%] 2 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [71/11aca2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 85%] 24 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 42%] 3 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [71/11aca2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample4) [ 85%] 24 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 42%] 3 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [e9/bedaa5] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 89%] 25 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 42%] 3 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [5e/123bb7] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 92%] 26 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [58/7f393c] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 42%] 3 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [e1/30b854] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 57%] 4 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [e1/30b854] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [06/390be3] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 57%] 4 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [87/b8f950] NFCORE_MAG:MAG:PRODIGAL (sample3) [ 71%] 5 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [73/eb525e] NFCORE_MAG:MAG:PRODIGAL (sample1) [ 85%] 6 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [c7/478678] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample1) [ 75%] 3 of 4 [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [100%] 7 of 7 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [100%] 7 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (85) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [bd/9f9326] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample1.assembly.fasta.gz) [ 87%] 7 of 8 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [100%] 7 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (86) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [ 87%] 7 of 8 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [100%] 7 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (86) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [ 87%] 7 of 8 [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [100%] 7 of 7 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [100%] 7 of 7 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [100%] 7 of 7 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (86) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [43/17172c] NFCORE_MAG:MAG:QUAST (FLYE-sample1) [ 87%] 7 of 8 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [ 87%] 7 of 8 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (87) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [b4/8cd68f] NFCORE_MAG:MAG:PRODIGAL (sample4) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [ 87%] 7 of 8 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (88) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [7c/9af37a] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (7) [ 87%] 7 of 8 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (89) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [ 87%] 7 of 8 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (89) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [ 87%] 7 of 8 [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [100%] 28 of 28 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (89) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [d0/362658] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample1) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (90) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [22/535706] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (91) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (92) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [fb/df407e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [f4/5288ad] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [f4/5288ad] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [ 87%] 7 of 8 [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [f4/5288ad] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [f4/5288ad] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [f4/5288ad] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 87%] 28 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [22/535706] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 90%] 29 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [fb/df407e] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 93%] 30 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [f4/5288ad] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [ 96%] 31 of 32 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (93) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 15 more processes waiting for tasks… executor > sge (94) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [b4/57449e] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample4) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (96) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [13/1c01d9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample4) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [- ] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (97) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [73/dfb972] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [8b/76f25f] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (98) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [6a/5974bf] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [8b/76f25f] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (100) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [3c/c53609] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [6a/5974bf] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [2c/272030] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample2) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (101) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [3c/c53609] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [ea/4f5dd6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [2c/272030] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample2) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (103) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [3c/c53609] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [90/55f802] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [ae/1083e2] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (104) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [3c/c53609] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [21/653c4d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [ae/1083e2] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (106) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [b2/8fadea] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [ae/1083e2] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (107) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [b2/8fadea] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [53/a19838] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample2) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (108) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [b2/8fadea] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [64/4e6f64] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample4) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (110) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (111) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [4f/dc2786] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample4) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (113) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ee/fb58c8] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample4) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [4f/dc2786] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample4) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (114) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ee/fb58c8] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample4) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (115) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [85/be305e] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (116) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ac/bfcd10] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (117) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (117) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (117) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (118) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ec/bc7730] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (120) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [30/f1a2e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (122) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [7d/f24a0f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (123) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (124) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (125) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (125) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (125) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (125) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (125) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS - [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 - [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (125) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ee/fb58c8] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample4) [ 25%] 2 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [- ] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (126) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ee/fb58c8] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample4) [ 25%] 2 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f3/bd47ab] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (127) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ee/fb58c8] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample4) [ 25%] 2 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (129) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ee/fb58c8] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample4) [ 25%] 2 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 0%] 0 of 2 [49/1cf910] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (129) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [ee/fb58c8] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample4) [ 25%] 2 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 0%] 0 of 2 [49/1cf910] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (129) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [b2/8fadea] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample1) [ 50%] 4 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 0%] 0 of 4 [49/1cf910] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (130) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [e5/06fe69] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample1) [ 0%] 0 of 5 [49/1cf910] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (131) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [e5/06fe69] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample1) [ 0%] 0 of 5 [5f/c24067] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample1) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (133) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [81/10cef3] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample1) [ 0%] 0 of 5 [cd/43063c] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample1) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (134) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 0%] 0 of 5 [cd/43063c] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample1) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (135) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 0%] 0 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 - [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (135) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 40%] 2 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:MAXBIN2 [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (136) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 40%] 2 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 0%] 0 of 5 [59/c1df43] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (137) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 40%] 2 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 0%] 0 of 5 [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (137) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [76/9b7164] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample4) [ 40%] 2 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 0%] 0 of 5 [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 14 more processes waiting for tasks… executor > sge (137) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [5f/c24067] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample1) [ 20%] 1 of 5 [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA [ 0%] 0 of 1 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (138) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (139) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [d0/92fe7e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (141) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [0b/880651] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample1) [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (143) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d3/5d463d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample4) [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (143) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d3/5d463d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample4) [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (143) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d3/5d463d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample4) [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (143) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d3/5d463d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample4) [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (144) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [a1/291b05] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample4) [ 60%] 3 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d3/5d463d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample4) [ 0%] 0 of 3 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (144) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 5 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d3/5d463d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample4) [ 0%] 0 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (145) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 5 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [f2/d2bd31] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample1) [ 0%] 0 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (146) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 5 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [ 0%] 0 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (146) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 5 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d3/5d463d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample4) [ 60%] 3 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (146) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 5 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (146) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [25/f7a562] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [ 62%] 5 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 5 of 5 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 5 of 5 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (146) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [85/be305e] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample2) [ 75%] 6 of 8 [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [f1/7e90b5] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 83%] 5 of 6 [f8/ba5c7f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 83%] 5 of 6 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (148) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [39/4e4695] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample2) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 62%] 5 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (149) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [39/4e4695] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample2) [ 62%] 5 of 8 [49/62adcc] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 62%] 5 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (150) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [93/f3c8b0] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample2) [ 62%] 5 of 8 [49/62adcc] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 62%] 5 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (151) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [93/f3c8b0] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample2) [ 62%] 5 of 8 [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 62%] 5 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (152) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [ 62%] 5 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [100%] 5 of 5 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (152) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [91/98ed41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample3) [ 83%] 5 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (153) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [ 83%] 5 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (153) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [e7/0edac2] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample4) [ 12%] 1 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [ 83%] 5 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (153) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [30/f1a2e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample1) [ 25%] 2 of 8 [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [ 83%] 5 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (154) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [30/f1a2e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample1) [ 25%] 2 of 8 [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [ 83%] 5 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (154) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [30/f1a2e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample1) [ 25%] 2 of 8 [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 0%] 0 of 2 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [100%] 6 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (154) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 37%] 3 of 8 [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [100%] 6 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (155) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 37%] 3 of 8 [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [100%] 6 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (155) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [ea/488b34] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample2) [ 37%] 3 of 8 [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 3 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [100%] 6 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (155) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [100%] 6 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (156) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [ 62%] 5 of 8 [98/2e5c89] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample2) [ 75%] 6 of 8 [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 5 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [100%] 6 of 6 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (156) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [ 75%] 6 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (157) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [ 75%] 6 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (158) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [48/43838d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MetaBAT2-sample2) [ 75%] 6 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (159) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [0a/278804] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample2) [ 75%] 6 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (161) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d9/01a827] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample3) [ 75%] 6 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (161) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d9/01a827] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample3) [ 75%] 6 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (161) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [0a/278804] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample2) [ 87%] 7 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (161) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d9/01a827] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample3) [100%] 8 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (161) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT - [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d9/01a827] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample3) [100%] 8 of 8 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (161) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [- ] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT [ 0%] 0 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d9/01a827] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample3) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (162) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [ 0%] 0 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [d9/01a827] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MetaBAT2-sample3) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (163) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [ 0%] 0 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [3a/2fc6b6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [ 50%] 4 of 8 [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 4 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (163) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [100%] 1 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (164) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [100%] 1 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (165) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [100%] 1 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [61/ff0d65] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (166) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [100%] 1 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (167) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [100%] 1 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (167) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [9d/ea4b11] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 12%] 1 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [100%] 1 of 1 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 88%] 8 of 9 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (167) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [ 50%] 1 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 80%] 8 of 10 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (168) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [99/6009ea] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample1) [ 50%] 1 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [ 80%] 8 of 10 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (169) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [ 50%] 1 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [ 80%] 8 of 10 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (169) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [ 80%] 8 of 10 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 13 more processes waiting for tasks… executor > sge (169) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [ 80%] 8 of 10 [- ] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (170) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [f1/7bad97] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.10.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (171) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [5c/3cdea1] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.5.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (172) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [41/198a79] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.4.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (174) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [21/602fd8] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.7.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (175) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [e4/e87a68] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.1.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (176) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [5c/96ecff] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.3.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (177) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [74/ea2e79] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.6.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (178) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [ef/33d509] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.11.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (179) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [92/9493f1] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.8.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (180) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [60/eee5f8] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.9.fa.gz) [ 0%] 0 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (180) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [ef/33d509] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.11.fa.gz) [ 81%] 9 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (180) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [15/5f9d5a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample1) [ 90%] 9 of 10 [60/eee5f8] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.9.fa.gz) [100%] 11 of 11 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (180) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [100%] 10 of 10 [60/eee5f8] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample1.noclass.9.fa.gz) [ 91%] 11 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (181) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [100%] 10 of 10 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [ 91%] 11 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (181) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [100%] 10 of 10 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [ 91%] 11 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (181) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 0%] 0 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING - [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [100%] 10 of 10 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (181) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [fe/30467a] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 25%] 2 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [100%] 2 of 2 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [100%] 10 of 10 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (181) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [59/c1df43] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 37%] 3 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [ 66%] 2 of 3 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [ 90%] 10 of 11 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (182) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [59/c1df43] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 37%] 3 of 8 [4a/3f312a] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample3) [ 66%] 2 of 3 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [ 90%] 10 of 11 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (183) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [59/c1df43] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 37%] 3 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 66%] 2 of 3 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [c5/633524] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample3) [ 90%] 10 of 11 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (184) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [59/c1df43] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 37%] 3 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 66%] 2 of 3 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [7b/195c05] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample4) [ 90%] 10 of 11 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (184) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [d0/92fe7e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 50%] 4 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 50%] 2 of 4 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [7b/195c05] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample4) [ 83%] 10 of 12 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (185) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [d0/92fe7e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 50%] 4 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 50%] 2 of 4 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/f2df9a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample1) [ 83%] 10 of 12 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (186) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [d0/92fe7e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 50%] 4 of 8 [ec/a91652] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample1) [ 50%] 2 of 4 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 0%] 0 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS - [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/f2df9a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample1) [ 83%] 10 of 12 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (186) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [d0/92fe7e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 50%] 4 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 75%] 3 of 4 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [- ] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/f2df9a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample1) [ 83%] 10 of 12 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (187) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [d0/92fe7e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 50%] 4 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 75%] 3 of 4 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/f2df9a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample1) [ 83%] 10 of 12 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (187) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [d0/92fe7e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample1) [ 50%] 4 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 75%] 3 of 4 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/f2df9a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample1) [ 83%] 10 of 12 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (187) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 60%] 3 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/f2df9a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample1) [ 76%] 10 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (188) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [4a/fd8f3c] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample4) [ 60%] 3 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/0f7a41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample4) [ 76%] 10 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [b1/77fda9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample4) [ 60%] 3 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/0f7a41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample4) [ 76%] 10 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [ec/a91652] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample1) [ 80%] 4 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/0f7a41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample4) [ 76%] 10 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [ec/a91652] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample1) [ 80%] 4 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/0f7a41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample4) [ 76%] 10 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [b1/77fda9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample4) [100%] 5 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 0%] 0 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/0f7a41] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample4) [ 84%] 11 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [b1/77fda9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample4) [100%] 5 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [a1/f2df9a] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample1) [ 92%] 12 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [6e/004e2d] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample4) [ 62%] 5 of 8 [b1/77fda9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample4) [100%] 5 of 5 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [7b/195c05] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample4) [100%] 13 of 13 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 75%] 6 of 8 [b1/77fda9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample4) [ 83%] 5 of 6 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [7b/195c05] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample4) [ 92%] 13 of 14 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (190) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 75%] 6 of 8 [86/1ba6c9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample3) [ 83%] 5 of 6 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [7b/195c05] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample4) [ 92%] 13 of 14 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (191) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [0e/1eb52e] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample3) [ 75%] 6 of 8 [86/1ba6c9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample3) [ 83%] 5 of 6 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [69/ef37d2] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample3) [ 92%] 13 of 14 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (191) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [86/1ba6c9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample3) [ 71%] 5 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [69/ef37d2] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample3) [ 86%] 13 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (192) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [86/1ba6c9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample3) [ 71%] 5 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 86%] 13 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (193) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [ 71%] 5 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 86%] 13 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (193) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [86/1ba6c9] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample3) [ 85%] 6 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 86%] 13 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (193) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a2/5357da] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 12%] 1 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 1 of 1 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 86%] 13 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (193) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d2/f7a38c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 33%] 1 of 3 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 86%] 13 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (195) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 33%] 1 of 3 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 86%] 13 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [100%] 12 of 12 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (195) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 33%] 1 of 3 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [69/ef37d2] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample3) [ 93%] 14 of 15 [dd/3f3026] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample3.noclass.1.fa.gz) [ 85%] 12 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (196) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 33%] 1 of 3 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [69/ef37d2] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample3) [ 93%] 14 of 15 [d4/f4ad82] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.2.fa.gz) [ 85%] 12 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (197) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 33%] 1 of 3 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [69/ef37d2] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample3) [ 93%] 14 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [ 85%] 12 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (197) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 33%] 1 of 3 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 1 of 1 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [100%] 15 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [ 85%] 12 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (197) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [c0/3916b1] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 33%] 1 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [100%] 15 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [ 85%] 12 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (198) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 33%] 1 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [100%] 15 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [ 85%] 12 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (199) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [7b/d6893c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [ 33%] 1 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [100%] 15 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [ 85%] 12 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (199) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [7b/d6893c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [ 33%] 1 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [100%] 15 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (199) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [7b/d6893c] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [ 33%] 1 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [100%] 15 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (199) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [91/8b4188] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [ 87%] 7 of 8 [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [100%] 7 of 7 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [100%] 3 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [100%] 15 of 15 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (199) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [95/c39715] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (METAMDBG-sample2) [ 87%] 7 of 8 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [100%] 3 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (200) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [ 87%] 7 of 8 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [100%] 3 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [5d/55a9ac] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (METAMDBG-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (201) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [ 87%] 7 of 8 [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [100%] 3 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (201) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [0e/3d9354] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 37%] 3 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [100%] 3 of 3 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [100%] 3 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (201) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 50%] 4 of 8 [d1/70d23f] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 75%] 3 of 4 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [100%] 3 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (202) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [c8/4528aa] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample3) [ 50%] 4 of 8 [6c/98b2a6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 75%] 3 of 4 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [100%] 3 of 3 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (202) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [6c/98b2a6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 80%] 4 of 5 [fb/66c5cd] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 75%] 3 of 4 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (203) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [6c/98b2a6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample3) [ 80%] 4 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 75%] 3 of 4 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (204) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [ 80%] 4 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 75%] 3 of 4 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (204) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [ 80%] 4 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 75%] 3 of 4 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (204) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 60%] 3 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (205) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [ 60%] 3 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (205) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [ 93%] 15 of 16 [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [100%] 14 of 14 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (205) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2e/14d0ef] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (METAMDBG-MaxBin2-sample3.noclass.1.fa.gz) [ 70%] 14 of 20 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (206) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [92/2dda5b] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.2.fa.gz) [ 70%] 14 of 20 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (207) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [41/5af643] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.6.fa.gz) [ 70%] 14 of 20 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (208) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e0/d62ddb] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.1.fa.gz) [ 70%] 14 of 20 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (210) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e0/89f4c2] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.3.fa.gz) [ 70%] 14 of 20 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (211) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [ 70%] 14 of 20 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (211) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [ 70%] 14 of 20 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ Plus 12 more processes waiting for tasks… executor > sge (211) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:PROKKA [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (212) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [e0/cbfbde] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample2.noclass.1) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (213) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [07/79136b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.6) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (214) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [41/115b86] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample2.noclass.5) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (216) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [69/12d4e5] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample3.noclass.1) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (217) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [0d/869595] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample2.noclass.6) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (219) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [58/fec24b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample3.noclass.1) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (220) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [ce/382b11] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.8) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (222) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [31/7a317b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.11) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (224) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [3b/5a3a64] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.1) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (225) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [84/f39b4e] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample2.noclass.2) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (226) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [84/f9667e] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample3.noclass.2) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (227) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [40/731e53] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.7) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (228) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [c2/acaa29] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.10) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (230) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [9b/4d545c] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.5) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [31/1c47e4] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample3) [ 80%] 4 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [ 87%] 7 of 8 [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [ 0%] 0 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [31/7a317b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.11) [ 50%] 10 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [e0/cbfbde] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample2.noclass.1) [ 55%] 11 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [40/731e53] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.7) [ 70%] 14 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [a0/ba0b7b] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample1) [ 62%] 5 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [100%] 5 of 5 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [07/79136b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.6) [ 75%] 15 of 20 Plus 11 more processes waiting for tasks… executor > sge (231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [a3/489959] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample1) [ 83%] 5 of 6 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [07/79136b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.6) [ 75%] 15 of 20 Plus 11 more processes waiting for tasks… executor > sge (232) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 83%] 5 of 6 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [100%] 5 of 5 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [76/e87d90] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.4) [ 80%] 16 of 20 Plus 11 more processes waiting for tasks… executor > sge (232) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 6 of 6 [38/08b3c6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample1) [ 83%] 5 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [76/e87d90] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.4) [ 80%] 16 of 20 Plus 11 more processes waiting for tasks… executor > sge (233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 6 of 6 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 83%] 5 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [76/e87d90] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.4) [ 80%] 16 of 20 Plus 11 more processes waiting for tasks… executor > sge (233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 6 of 6 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 83%] 5 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [76/e87d90] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.4) [ 80%] 16 of 20 Plus 11 more processes waiting for tasks… executor > sge (233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 6 of 6 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 83%] 5 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [3b/5a3a64] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.1) [ 85%] 17 of 20 Plus 11 more processes waiting for tasks… executor > sge (233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 6 of 6 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 83%] 5 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [2a/fc3d6e] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.2) [ 90%] 18 of 20 Plus 11 more processes waiting for tasks… executor > sge (233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 6 of 6 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 83%] 5 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [70/0a4931] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample4) [ 75%] 6 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [100%] 6 of 6 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 6 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 87%] 7 of 8 [3b/b4020d] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample4) [ 85%] 6 of 7 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 6 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (234) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 87%] 7 of 8 [23/a27620] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [ 85%] 6 of 7 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [100%] 6 of 6 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (234) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 87%] 7 of 8 [23/a27620] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 7 of 7 [b5/9016b7] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample4) [ 85%] 6 of 7 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (235) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 87%] 7 of 8 [23/a27620] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 7 of 7 [8f/389c2a] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [ 85%] 6 of 7 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (235) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 87%] 7 of 8 [23/a27620] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 7 of 7 [8f/389c2a] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [ 85%] 6 of 7 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (235) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [03/8d74ef] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [ 87%] 7 of 8 [23/a27620] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 7 of 7 [8f/389c2a] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 7 of 7 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (235) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [23/a27620] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [ 87%] 7 of 8 [8f/389c2a] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 7 of 7 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (236) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [ 87%] 7 of 8 [8f/389c2a] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 7 of 7 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (236) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [8f/389c2a] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [ 87%] 7 of 8 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [ 87%] 7 of 8 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [ 87%] 7 of 8 [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 0%] 0 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [1a/93ff19] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [ 12%] 1 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [64/4e6f64] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample4) [ 25%] 2 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [ae/1083e2] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 37%] 3 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [53/a19838] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample2) [ 50%] 4 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [8b/76f25f] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 62%] 5 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [8b/76f25f] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample3) [ 62%] 5 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… WARN: [SGE] queue status cannot be fetched - cmd executed: qstat - exit status : 1 - output : executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [4f/dc2786] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample4) [ 75%] 6 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [2c/272030] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample2) [ 87%] 7 of 8 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… executor > sge (237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 11 more processes waiting for tasks… [97/af2bc6] NOTE: Process `NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1)` terminated with an error exit status (1) -- Error is ignored executor > sge (238) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [d5/0fd908] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample1) [ 0%] 0 of 2 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 10 more processes waiting for tasks… [97/af2bc6] NOTE: Process `NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1)` terminated with an error exit status (1) -- Error is ignored executor > sge (239) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [ 0%] 0 of 2 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 10 more processes waiting for tasks… [97/af2bc6] NOTE: Process `NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1)` terminated with an error exit status (1) -- Error is ignored executor > sge (239) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [ 0%] 0 of 3 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 10 more processes waiting for tasks… [97/af2bc6] NOTE: Process `NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1)` terminated with an error exit status (1) -- Error is ignored executor > sge (240) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [9c/91437e] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample4) [ 0%] 0 of 4 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 10 more processes waiting for tasks… [97/af2bc6] NOTE: Process `NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1)` terminated with an error exit status (1) -- Error is ignored executor > sge (241) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [92/683ede] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample2) [ 0%] 0 of 4 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 10 more processes waiting for tasks… [97/af2bc6] NOTE: Process `NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1)` terminated with an error exit status (1) -- Error is ignored executor > sge (241) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [92/683ede] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample2) [ 0%] 0 of 4 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 10 more processes waiting for tasks… executor > sge (241) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [9c/91437e] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample4) [ 50%] 2 of 4 [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [- ] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS [ 0%] 0 of 24 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (242) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [53/9d3379] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.004.fa.gz) [ 0%] 0 of 250 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (243) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d0/755ae5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.009.fa.gz) [ 0%] 0 of 428 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (244) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ae/c6fd08] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.018.fa.gz) [ 0%] 0 of 599 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (245) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [97/e5ee66] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.036.fa.gz) [ 0%] 0 of 775 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (245) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [97/e5ee66] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.036.fa.gz) [ 0%] 0 of 950 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (246) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fb/e5c3d6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.011.fa.gz) [ 0%] 0 of 1139 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (248) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ad/549303] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.017.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (250) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [30/f61089] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.017.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (251) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [07/0a1096] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.002.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (253) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0e/965d38] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.010.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (254) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [95/7d8c15] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.022.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (255) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0d/3c0b0b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.029.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (256) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0e/ae1f87] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.031.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (258) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/a25540] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.007.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (259) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [de/260c8f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.013.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (261) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5f/2ff2bc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_1.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (263) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c5/6b229c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.012.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (264) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/be1419] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.005.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (265) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/d45e31] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.039.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (267) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ea/978029] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.003.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (268) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d4/14d3da] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.010.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (270) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [21/d8233d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.008.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (271) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/97a7f3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.025.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (273) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/03f559] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.001.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (274) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [15/6d8a04] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.014.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (276) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [35/7f4e4f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.027.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (278) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2f/b70ac3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.023.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (280) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8a/ab2eb7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.009.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (281) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5d/7506e7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.032.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (283) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [43/c34790] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_0.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (285) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [36/9e77a6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.035.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (286) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [36/e754f4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.016.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (287) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6b/e5bdba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.003.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (289) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e7/92de76] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.046.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (290) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5b/493c33] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.034.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (292) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [28/89493a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.006.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (293) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2a/88335e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.037.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (295) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [de/7bb458] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_11.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (297) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/64763f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_12.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (298) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f0/c5bbef] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample1.006.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (300) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [36/7ad270] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.041.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (301) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [da/ccc899] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.042.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (303) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ff/eab28f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.028.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (305) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [46/de8325] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.020.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (306) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [65/78c4af] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.014.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (308) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [eb/07589d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_17.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (310) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ed/608ee7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_13.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (312) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7f/b09f80] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.001.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (313) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e0/2a0225] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_16.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (315) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/00311c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.038.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (316) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [78/910edf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_10.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (318) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8c/b2a8e2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_15.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (319) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [51/67c2d8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_18.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (321) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c3/949911] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_19.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (322) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [52/4a3737] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_2.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (324) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9c/8f9dae] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_23.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (325) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c2/f09d1e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_22.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (327) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fc/4f23b2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_27.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (328) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [68/3f8674] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_26.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (329) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [45/9ee74e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_29.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (331) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f4/e7eef5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_32.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (333) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ca/f87e5e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_34.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (335) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8f/daf12d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_36.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (336) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e7/23e425] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_38.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (338) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f3/4ee6ce] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_37.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (339) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [01/2e1e6a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_4.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (340) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [66/676727] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_40.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (341) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9a/ab5673] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_26.fa.gz) [ 0%] 0 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (341) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [80/8a2a58] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample1.005.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (342) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3a/a1e901] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_41.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (343) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c3/d84a41] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_43.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (345) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [76/500f53] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_42.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (347) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [43/77e0c2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_47.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (348) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/4e1e6c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_46.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (350) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4b/a5db49] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_49.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (351) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [78/7c0905] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_51.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (353) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0c/c832f3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_55.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (355) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d2/733425] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_50.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (357) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bb/f0871c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_56.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (358) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/e8213d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_57.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (359) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5b/179606] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_60.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (360) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e2/215aa1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_58.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (362) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c4/b40d37] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_6.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (363) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [69/2821d0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_62.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (365) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0b/a53f70] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_64.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (366) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [58/b7c16a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_65.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (368) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/35a064] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_68.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (369) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [87/e6d54c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_69.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (371) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2f/c559f8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_7.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (372) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [80/b766f2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_0.fa.gz) [ 2%] 31 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (372) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [de/7bb458] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_11.fa.gz) [ 4%] 54 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (373) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [69/1ad521] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_8.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (374) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a8/eadde8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_1.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (376) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ca/c87706] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_11.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (378) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [68/592215] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_14.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (379) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a5/693303] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_13.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (381) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cb/170012] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_15.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (383) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [de/fb1165] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_19.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (384) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8e/76ede7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_18.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (386) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/e3482c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_20.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (387) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [59/19d570] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_21.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (389) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d9/f825e7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_24.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (390) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [56/7334c0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_23.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (392) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5d/da6f80] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_28.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (394) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [71/d42ed6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_27.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (396) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [86/6e6a07] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_32.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (397) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9f/c39af5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_31.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (399) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b7/2c2fe5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_3.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (400) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [40/5a2f4d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_34.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (401) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d5/9755a1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_35.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (403) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1e/9551bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_36.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (404) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cb/1f3dda] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_37.fa.gz) [ 5%] 63 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (404) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/291d7c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample1_25.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (405) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c3/7dbe36] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_40.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (407) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f4/24c671] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_38.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (409) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/a4866d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_45.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (411) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f6/28cc4c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_43.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (412) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3d/751075] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_39.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (414) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f5/8acd4c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_41.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (416) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4c/6db164] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_49.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (417) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b2/3302e3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_50.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (419) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [83/45f2ea] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_48.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (420) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c1/b0e225] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_5.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (422) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [69/6fac5b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_54.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (424) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/b6c2da] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_56.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (425) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c8/34fdcf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_57.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (426) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6f/6cd196] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_55.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (426) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6f/6cd196] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_55.fa.gz) [ 6%] 85 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (427) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/3a1ba5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_58.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (428) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cc/7bd4b2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_60.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (430) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4f/1f439e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_64.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (431) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a8/59f405] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_65.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (433) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/8f44ca] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_66.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (434) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3b/95032f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_62.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (436) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [69/45fa93] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_8.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (438) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [84/49c087] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_6.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (440) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ff/869bc6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1037.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (441) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2f/f5db84] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1096.fa.gz) [ 7%] 100 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (441) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [80/b766f2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_0.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (442) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [30/c333b4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.110.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (444) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ed/eb258a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1188.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (445) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [52/1fcb77] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1254.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (447) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d5/a72bfe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1314.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (448) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e1/3d2b6c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1215.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (450) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [23/ce8925] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1185.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (452) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8d/bdbc0c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1371.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (454) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [18/50879c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1406.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (455) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6a/51bf55] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1402.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (456) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [98/f28f88] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1549.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (458) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e1/80707f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1604.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (459) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/2327fc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1619.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (461) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ae/86b183] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1618.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (463) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e6/224d75] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1673.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (464) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8e/91bbb6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1663.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (466) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c9/1df63e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1677.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (467) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6b/85412f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1688.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (469) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [13/61fdf1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1689.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (470) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ce/8c19dd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1696.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (471) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [13/b8719a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1695.fa.gz) [ 10%] 131 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (472) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d5/9755a1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_35.fa.gz) [ 12%] 160 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (473) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [89/6353a7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.2.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (475) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [47/0b7166] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.1693.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (477) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cf/e7133f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.433.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (478) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [eb/759ca0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.564.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (479) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ea/20dcc0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.582.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (481) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [52/f44f01] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.843.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (482) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f4/2c39dd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.801.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (483) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [27/682b0f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.598.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (484) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [16/f3b8ef] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.474.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (486) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/a5065f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.878.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (487) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [95/dee12b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample4.1.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (489) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b4/077036] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample1.974.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (491) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b1/6ba831] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.008.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (492) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [94/7ce584] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.006.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (494) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0f/8dc319] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.001.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (496) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [71/4a6e09] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.010.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (497) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [24/da64e1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.004.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (499) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8f/403280] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.011.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (501) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b8/460210] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.012.fa.gz) [ 12%] 163 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (501) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6f/6cd196] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_55.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (501) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6f/6cd196] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample1_55.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (502) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [db/3e2188] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.013.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (504) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ae/897c22] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.015.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (506) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c8/600cb9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.016.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (508) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4f/ec2463] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.018.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (510) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5c/cc7192] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.014.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (511) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5e/bba584] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample4.019.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (513) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [45/d2f079] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.003.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (515) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/a93afe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.001.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (517) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3e/f35cb1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.009.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (518) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/a8caf2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.006.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (520) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [12/1feb8a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.008.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (522) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f5/9243ad] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.011.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (523) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [59/0f7a46] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.012.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (525) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [26/8e2c59] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.017.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (526) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [39/aa9e3f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.014.fa.gz) [ 14%] 185 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (527) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/7e4350] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.019.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (528) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/7c0382] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_43.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (530) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [92/ecfbfc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.015.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (532) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [09/2469c2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.024.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (533) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bb/754206] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.021.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (534) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ef/805577] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.020.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (536) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [67/54130c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.022.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (537) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [75/e4609e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_50.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (540) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b8/0f1f05] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.028.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (541) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [77/a8dede] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.029.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (542) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cf/119b23] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.027.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (543) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d0/808a50] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_1.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (545) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6c/e46676] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_10.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (546) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4a/00e929] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_12.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (548) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4a/b61163] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_0.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (549) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/75872b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_14.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (550) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d5/272504] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_15.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (552) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/29cd04] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_16.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (553) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f1/9ea68d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_19.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (555) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [25/54784a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_2.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (556) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [34/2f8479] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_21.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (558) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c0/452444] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_23.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (559) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/f8b512] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_25.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (561) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ce/979fda] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_27.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (562) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2d/f6a133] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_28.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (563) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1e/cf7e14] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_3.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (565) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0a/7775ed] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_29.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (566) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cc/d83a06] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_31.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (568) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [69/d3d7a4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_32.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (570) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [50/3513b0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_35.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (571) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5a/e39a46] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_34.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (573) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ec/4db242] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_38.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (574) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [05/0b426f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_36.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (575) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d4/bed622] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_39.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (576) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ae/9492e0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_4.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (578) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f8/c28dcb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_41.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (579) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c1/012f32] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_42.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (580) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5a/403609] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_45.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (581) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8b/868335] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_46.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (583) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dd/3891d6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_44.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (584) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f4/17131f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_48.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (586) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ea/c5f08c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_5.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (587) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a5/950d76] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_51.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (588) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [85/ae5b96] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_52.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (589) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [08/ec4337] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_53.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (590) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [15/306018] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_7.fa.gz) [ 19%] 249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (591) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [10/ddd5f8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_6.fa.gz) [ 20%] 260 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (593) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/ce667e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_0.fa.gz) [ 20%] 260 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (595) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b2/47d635] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_1.fa.gz) [ 20%] 260 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (596) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a5/8dd956] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_10.fa.gz) [ 20%] 260 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (597) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f3/3a3600] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_11.fa.gz) [ 20%] 260 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (599) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c4/17eeb7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_14.fa.gz) [ 20%] 260 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (601) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a2/7eac7b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_13.fa.gz) [ 20%] 260 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (601) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [39/aa9e3f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.014.fa.gz) [ 22%] 285 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (602) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/7c0382] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_43.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (604) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f8/841f61] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_19.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (606) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b6/317456] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_2.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (607) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8a/78d87d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_21.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (609) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/b4bbb8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_23.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (611) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d3/cb51f7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_24.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (612) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [30/fbeb8b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_26.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (613) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7f/cdb2d2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_27.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (615) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [86/97c29b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_29.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (616) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [de/c7a338] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_30.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (618) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f2/20cc83] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_31.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (619) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4f/494646] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_33.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (621) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c7/2ee0cf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_32.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (622) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d2/89bf57] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_35.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (624) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d8/fa2e87] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_37.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (625) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f8/3ea1ee] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_38.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (627) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [92/ec8bdd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_40.fa.gz) [ 22%] 286 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (627) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ef/805577] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample4.020.fa.gz) [ 23%] 293 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (629) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3d/ce443c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_41.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (630) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bb/88cc9a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_43.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (632) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d1/e48179] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_42.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (634) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7b/c3f3a2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_46.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (636) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ad/5dcd32] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_48.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (638) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [09/82bf4c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_5.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (639) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9f/86427b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_50.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (640) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6a/7065c5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_51.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (642) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ce/b6964f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_53.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (643) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8b/fc8b3b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_54.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (645) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9a/d138cf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_56.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (646) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d6/1d97f9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_57.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (647) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8c/36b9b2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_59.fa.gz) [ 24%] 306 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (647) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [de/259df7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_22.fa.gz) [ 25%] 316 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (648) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [68/ef8d1c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_6.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (650) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1b/0d2f95] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_61.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (652) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [77/6233c5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_62.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (653) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [37/e8a53b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_64.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (655) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c7/b36d20] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_66.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (656) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bc/498026] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_67.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (658) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/8a39e5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_7.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (660) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [70/6db374] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_72.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (661) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [53/0655b1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_71.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (663) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [18/233ed9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_8.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (665) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [14/a6073d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.0.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (666) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0c/aea547] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (668) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f0/e53ff7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1057.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (670) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a2/f2e2bf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1234.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (672) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/1cbdf2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1238.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (673) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5a/ddd053] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1381.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (675) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [be/ea8147] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1486.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (676) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [11/1c1639] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1558.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (677) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5c/f4498e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1622.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (678) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [06/8d3374] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1596.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (679) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [06/735b4b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1681.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (680) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6e/dbc3f0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1699.fa.gz) [ 27%] 340 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (681) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [15/306018] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample4_7.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (683) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [39/fd439f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1770.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (684) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e6/3480f0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1931.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (685) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d7/0b1c15] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1768.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (687) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cd/d6c9bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2126.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (688) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c4/5bc6f3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2130.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (689) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [91/166887] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2150.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (690) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d1/542b47] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2166.fa.gz) [ 27%] 349 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (690) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a2/7eac7b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_13.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (691) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3e/057233] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2186.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (692) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6d/55642f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2179.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (694) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [77/fee623] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2240.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (696) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [79/64446b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2312.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (697) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [97/60d429] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2413.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (699) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [76/7a2985] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2491.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (701) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d4/352c45] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2505.fa.gz) [ 28%] 360 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (701) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [92/ec8bdd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_40.fa.gz) [ 30%] 386 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (702) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3d/ce443c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_41.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (704) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8c/6c70ab] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2736.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (705) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [94/ccf02c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2659.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (706) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b6/d96e31] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2698.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (708) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [67/89f5ba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2650.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (710) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [61/aea83a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2776.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (711) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ec/7c2e9b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2793.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (713) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a8/4749ea] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2839.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (715) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d1/f9a837] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2853.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (716) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [62/2dcbec] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.290.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (718) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7b/cac73f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2918.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (719) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [72/db9a2e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2927.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (721) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [52/1f33b8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2931.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (722) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/a66e44] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2935.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (723) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [56/097ae0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2943.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (725) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bf/cf22e9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2944.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (726) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [10/317a9c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2945.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (727) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a3/875266] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2946.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (728) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8f/b651e6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2949.fa.gz) [ 30%] 387 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (728) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8c/36b9b2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample4_59.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (729) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d3/d10039] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2952.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (731) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2b/30fcde] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2954.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (732) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ea/d81249] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2955.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (733) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [12/af85a7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2957.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (735) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4c/40fe57] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2958.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (736) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3b/0236db] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2959.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (738) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [27/54e990] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.34.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (740) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [07/df129b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2961.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (742) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [03/57dbe8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.43.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (743) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [06/4411e1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.516.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (744) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [99/194b2c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.549.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (745) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [62/7d396f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.660.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (747) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/69ecb5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.721.fa.gz) [ 32%] 406 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (747) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [16/360b35] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.1639.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (749) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/0386b9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.817.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (750) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [71/6489b9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.863.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (752) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b5/759610] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample4.0.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (753) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f2/ab014f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample4.18.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (755) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [59/e1d42b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample2.1.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (757) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [65/8676f3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.002.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (758) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7f/4f9697] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.003.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (759) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c4/0a4294] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.004.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (760) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2d/cb0363] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.005.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (762) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b1/b23370] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.007.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (763) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [19/833ca5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.008.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (765) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [45/499a08] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.010.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (767) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cb/e09c78] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.012.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (769) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ad/67122f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.013.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f5/7bd6f3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.016.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (772) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [77/a514e2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.018.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (773) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e3/8467f0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.017.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (775) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [91/966141] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.020.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (776) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d7/3d55d8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.021.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (778) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bf/d4f40c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.023.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (779) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [29/1483d1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.025.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (781) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/90a650] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.026.fa.gz) [ 35%] 440 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (781) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d1/542b47] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample4.2166.fa.gz) [ 35%] 449 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (782) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c3/983eb5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.027.fa.gz) [ 35%] 449 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (784) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/92dde3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.029.fa.gz) [ 35%] 449 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (785) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [50/7c2735] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.001.fa.gz) [ 35%] 449 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (787) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [50/d9ce6e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.030.fa.gz) [ 35%] 449 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (789) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d8/6396d8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.004.fa.gz) [ 35%] 449 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (790) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c0/64a075] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.005.fa.gz) [ 35%] 449 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (790) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2d/cb0363] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample2.005.fa.gz) [ 41%] 519 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (792) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [87/48ff53] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.006.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (793) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d6/2ee67e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.009.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (794) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2c/71d42c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.008.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (795) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6d/6593d2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_41.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (797) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5a/7fedaf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.012.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (798) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0c/e8971c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.011.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (800) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b7/4e3e8b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.015.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (802) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [84/3cdae7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.016.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (803) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6e/495443] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_5.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (805) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [42/a52288] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.017.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (807) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [16/91b79e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.021.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (809) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bb/5453ce] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.022.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (811) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dc/66d01e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.023.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (812) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f6/7ada8b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_1.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (814) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b7/119b40] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_100.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (815) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bb/0fdcd4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_101.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (817) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [70/561c26] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_12.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (819) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/e309dc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_15.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (821) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [26/a5f8c1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_16.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (822) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [10/a3b424] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_17.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (824) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [20/f064cf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_18.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (825) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fe/5104d5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_2.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (827) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9f/ec9235] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_21.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (828) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [37/18dcda] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_23.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (830) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [83/bb8435] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_25.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (831) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [80/911ecf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_26.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (833) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0f/3da58d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_28.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (835) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [51/fdc94d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_3.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (836) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6b/c7647c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_30.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (838) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [93/1473dc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_31.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (840) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [eb/2280bc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_35.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (841) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [28/12b47a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_36.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (843) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/80639e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_39.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (844) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [52/3b9cc7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_38.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (846) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2f/cdf02a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_40.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (848) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6b/e74bbc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_43.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (849) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/0a7760] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_45.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (850) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f6/ad2af1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_46.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (851) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bd/e8d0c3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_47.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (852) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7b/7b2e70] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_48.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (854) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [aa/7ddca8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_51.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (855) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ec/52731e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_52.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (857) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [67/19a66e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_53.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (859) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4f/949603] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_10.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (860) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [17/a319ef] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_56.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (862) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fb/daa1cf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_57.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (863) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [45/24aa32] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_58.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (865) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ec/484e4e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_6.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (867) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [94/dbc8e1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_62.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (868) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [83/e49802] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_63.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (870) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/8cad50] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_65.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (871) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [70/df3aa1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_66.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (872) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0d/727b99] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_67.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (873) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [05/f9d465] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_68.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (874) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [20/3f3ba1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_69.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (876) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0b/145c35] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_71.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (877) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7b/c88190] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_72.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (878) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [94/44e944] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_73.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (879) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [75/0bb02f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_74.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (881) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3c/141b55] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_76.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (882) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ce/2e8b1b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_77.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (884) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [55/6948fe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_79.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (885) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [65/aab8f5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_80.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (887) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bb/19365f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_81.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (888) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e7/2f818b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_82.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (890) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dd/36708e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_84.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (890) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dd/36708e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_84.fa.gz) [ 43%] 549 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (890) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [42/a52288] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample2.017.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (891) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [52/e545a1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_85.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (893) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f9/c68170] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_88.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (894) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f9/cb6a25] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_89.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (896) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3c/b64639] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_9.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (897) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [33/d422aa] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_90.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (898) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b6/1af6a0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_91.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (900) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [28/45696d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_93.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (901) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [63/59ef14] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_94.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (903) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c0/fd9147] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_96.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (904) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [07/ca3eeb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_97.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (905) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6e/24565e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_98.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (905) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6e/24565e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_98.fa.gz) [ 44%] 564 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (906) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7a/33d8a5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_99.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (907) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/656f95] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_0.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (909) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/496ed1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_56.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (910) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ac/9ff28b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_13.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (911) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fe/dbc741] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_12.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (913) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fa/a8eb4f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_15.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (914) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [73/544d53] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_14.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (915) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [34/0fb21c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_16.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (917) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0a/c75823] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_18.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (918) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [81/e25297] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_19.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (920) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0a/b47065] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_20.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (921) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/acf5bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_21.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (922) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ee/981c56] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_22.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (924) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [eb/45db0a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_24.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (925) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4d/944d97] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_70.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (927) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [40/fc53fa] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_26.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (929) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [01/e60655] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_28.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (931) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [98/219f97] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_3.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (932) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8d/cf57ad] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_30.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (933) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/977d12] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_32.fa.gz) [ 48%] 604 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (933) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [94/44e944] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_73.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (934) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1c/0b70d7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_31.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (935) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [97/4f656b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_33.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (936) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5a/0e7e46] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_34.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (938) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9b/64ba16] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_36.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (939) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d9/39d4ba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_37.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (941) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ff/4a8a89] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_39.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (943) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f8/629155] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_4.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (944) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a0/058726] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_41.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (946) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [14/e5a65c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_43.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (947) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [be/311331] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_44.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (948) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d1/55c252] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_45.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (949) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d4/09bac0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_46.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (951) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6b/6acb51] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_48.fa.gz) [ 50%] 637 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (951) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dd/36708e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_84.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (952) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [99/4473bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_49.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (953) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [57/4bb8e7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_5.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (955) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ae/fba562] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_51.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (956) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [50/5d487d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_52.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (958) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7b/05e804] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_54.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (959) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [99/9a52dd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_55.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (961) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [92/2e8524] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_58.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (962) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [36/c7327b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_59.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (964) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1c/ca40b8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_60.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (966) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [14/203486] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_62.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (967) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dc/5a38b1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_63.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (969) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [58/7e032e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_65.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (970) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3b/6ebc84] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_66.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (971) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8f/0f756f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_69.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (972) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7f/9384de] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_67.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (973) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [69/36726f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_7.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (974) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e9/e420c1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_68.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (975) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/4f5f2a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_72.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (976) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [91/2d3023] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_8.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (978) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [94/4da980] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.0.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (980) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [76/94eb60] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1100.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (981) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e5/fbaef1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_71.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (983) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [63/c95972] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1178.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (985) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/d02f57] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1223.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (986) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cb/59d78a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1322.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (988) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3a/9358f0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1384.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (990) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/416801] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1639.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (990) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/416801] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1639.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (990) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/416801] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1639.fa.gz) [ 51%] 649 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (990) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6e/24565e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample2_98.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (991) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e9/a6efd9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.164.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (993) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9d/07f7f3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1799.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (994) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [93/a1db2c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1885.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (996) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e9/26f1e3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1952.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (997) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1f/0b4546] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1996.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (999) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ed/a2d205] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2041.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1000) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [11/b421bc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2152.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1002) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5a/2bd94e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2225.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1003) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a4/f1193b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2270.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1005) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [df/efe243] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2436.fa.gz) [ 52%] 664 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1005) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1c/0b70d7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_31.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1007) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/ceeae1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2466.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1009) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9e/dfc2d2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2560.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1011) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [96/7d56f2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4136.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1012) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8a/70d5f5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2644.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1014) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1e/5955a3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2736.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1016) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6a/3281ea] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2825.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1018) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [03/71a21a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2836.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1019) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e6/968045] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2912.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1020) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c5/5c8be4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4187.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1022) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/e474ce] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3024.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1023) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0b/a69ec4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3035.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1025) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9f/b6084c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3129.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1026) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/be88d3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3144.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1028) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7f/983764] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3177.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1029) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a3/9422bd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3216.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1031) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [14/34ef68] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3331.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1032) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [aa/0d000e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3371.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1034) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [45/1fa72e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3425.fa.gz) [ 55%] 693 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1034) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [99/4473bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_49.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1035) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6a/227311] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3446.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1037) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/6f769d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.35.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1038) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c8/6b8151] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3548.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1040) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ef/f85493] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3554.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1041) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [79/7c9e37] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3687.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1042) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bc/f22445] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3709.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1043) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d6/bdf174] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3714.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1045) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [97/cf3bb0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3806.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1047) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f0/f6e02d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3915.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1048) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5d/c108fe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3881.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1050) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [56/f34d86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.395.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1052) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ca/ed57c0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4041.fa.gz) [ 56%] 711 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1052) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3b/6ebc84] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample2_66.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1054) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f1/68b16c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.3958.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1055) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [99/1098a0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4023.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1057) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [46/7d1feb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4108.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1059) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [31/5deaf4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4112.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1061) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8c/a91558] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4134.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1062) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c6/d90297] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4146.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1064) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4b/5d5033] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4157.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1066) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7e/bbf2e7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4160.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1067) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c9/bcc5ad] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4169.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1069) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ca/3fc1de] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4186.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1070) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5b/ce900b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4188.fa.gz) [ 57%] 729 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1070) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/416801] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.1639.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1072) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e1/015fc5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4194.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1073) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [83/eb3a6b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4197.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1074) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [06/8133c5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.478.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1076) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6d/8c7d44] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.558.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1077) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a0/1cf157] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.614.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1079) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ed/c1b677] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.790.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1080) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fb/77629a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.844.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1082) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/f1b922] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.937.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1083) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [16/6101f8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.95.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1085) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [47/169ca1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample2.13.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1086) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0f/7d8a01] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample2.0.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1087) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dc/256176] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.1.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1089) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [47/cfe2d9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.11.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1090) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [40/23dddd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.12.fa.gz) [ 59%] 749 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1090) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [df/efe243] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2436.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1091) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d6/637f16] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.13.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1092) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8f/e79897] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.10.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1094) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7b/ece2db] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.3.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1096) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e9/0c8924] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.5.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1097) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b9/dd4cb7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.7.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1099) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d4/023ba8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.6.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1100) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0f/a20095] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MetaBAT2-sample3.9.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1102) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c3/606a29] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample3.10.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1104) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [02/700705] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample3.3.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1105) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [54/aa763e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample3.2.fa.gz) [ 60%] 764 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1105) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [82/bbd687] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.2590.fa.gz) [ 61%] 772 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1107) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b0/e6ee1a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample3.5.fa.gz) [ 63%] 793 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1108) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c0/4afc6a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.025.fa.gz) [ 63%] 793 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1110) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [13/374bcb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample3.7.fa.gz) [ 63%] 793 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1112) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1c/70baf3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample3.9.fa.gz) [ 63%] 793 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1112) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ca/ed57c0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample2.4041.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1113) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/035927] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.001.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1114) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [30/67cda9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.002.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1116) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8a/157753] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.004.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1117) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [45/10c788] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.005.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1119) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [61/c7211e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.007.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1121) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/fa7279] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_13.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1123) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [85/394a02] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_17.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1124) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9b/8b1be6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.010.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1125) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3c/7ec0a8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.011.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1126) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8a/036bc8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.012.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1127) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b1/2fbb2e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.013.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1129) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3f/0da3b4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.015.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1130) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e7/ff3357] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.016.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1132) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [54/5c2212] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.018.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1134) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [31/c6305c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.020.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1135) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b2/9cacf5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.021.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1136) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [96/464e92] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.001.fa.gz) [ 64%] 811 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1137) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c8/def830] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.002.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1137) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c8/def830] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.002.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1139) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [68/4b4a33] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.004.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1141) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [da/b7ebc5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.005.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1142) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/2aa617] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.006.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1144) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [24/5bee9f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.008.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1146) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [15/6c57d6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.011.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1148) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [68/c31513] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.012.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1149) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1f/d1d96b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.013.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1151) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3d/ccdb3d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.015.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1152) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9b/4621db] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.017.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1153) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [55/6274ba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.018.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1154) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c4/262bf2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.019.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1156) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0d/05c899] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.020.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1158) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [34/479dec] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_51.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1159) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3d/9dbf14] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.022.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1160) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e6/ab317e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.023.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1162) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8d/d9d5c2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.026.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1164) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e1/77dd9d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.028.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1165) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c6/002802] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.030.fa.gz) [ 65%] 829 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1166) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/094cca] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.029.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1167) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/f92e4b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.031.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1168) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [91/466b9d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_0.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1170) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/bb92cb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_11.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1172) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [31/ebd63c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_12.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1173) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [09/086585] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_14.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1175) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [50/996ad9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_18.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1177) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [11/d27ab5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_20.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1178) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a1/a54bda] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_2.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1179) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [93/9af8ac] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_22.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1181) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3c/45779b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_23.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1182) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b1/8611ef] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_24.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1183) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ee/72ff73] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_26.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1185) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [51/e76ff9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_28.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1187) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ac/eff4af] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_29.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1189) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [23/1ee02a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_30.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1190) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f5/9a6dd4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_31.fa.gz) [ 67%] 849 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1190) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [54/aa763e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MetaBAT2-sample3.2.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1191) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [29/bc8f71] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_32.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1192) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [91/2dcdc1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_34.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1194) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f7/67cde2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_35.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1196) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/e05c1d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_38.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1197) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/514892] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_23.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1199) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [17/1513ab] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_41.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1200) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [85/7a46bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_42.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1202) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [61/003c4f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_44.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1204) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [74/fb2ee2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_46.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1205) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4d/5a979f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_47.fa.gz) [ 68%] 864 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1205) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/035927] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-MaxBin2-sample3.001.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1206) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4f/756df3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_48.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1207) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [81/a905fb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_49.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1208) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [24/66f323] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_5.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1209) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/33cf31] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_50.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1210) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [32/a15d70] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_52.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1211) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [54/8f4b1b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_53.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1213) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/094e6b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_56.fa.gz) [ 69%] 872 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1213) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c8/def830] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.002.fa.gz) [ 71%] 896 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1214) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c4/262bf2] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-MaxBin2-sample3.019.fa.gz) [ 72%] 912 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1215) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [63/ec02e8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_57.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1216) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [95/b11293] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_59.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1217) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [27/e8bf9f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_60.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1219) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b6/556a15] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_62.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1221) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [02/9133dc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_63.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1223) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e4/730a9c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_65.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1224) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5b/d85bd4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_66.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1226) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [41/500abe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_68.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1228) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7f/b86c52] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_7.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1229) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/8f4b56] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_9.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1231) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [52/44898c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_0.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1232) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8a/e39142] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_1.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1233) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [46/deba59] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_10.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1235) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [90/5ea4eb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_12.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1237) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a5/0540e3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_14.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1239) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b5/3a4f42] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_15.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1240) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [35/356337] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_16.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1242) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1c/a6ca9e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_18.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1243) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0b/52909f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_19.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1245) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2a/742674] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_20.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1247) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0d/5f60cd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_22.fa.gz) [ 74%] 933 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1247) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f5/9a6dd4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_31.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1249) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8e/d56614] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_25.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1251) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [27/b6d708] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_27.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1253) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f4/d9b649] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_29.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1255) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1b/5f1d26] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_3.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1256) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d3/f8ed6d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_31.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1258) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [93/9ee2b3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_33.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1259) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [09/810c50] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_34.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1260) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/deebdf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_35.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1261) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/384dc4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_36.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1262) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/4dc7cf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_37.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1263) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [42/5ccfaa] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_38.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1264) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cd/be8ed0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_4.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1266) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [95/b68037] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_40.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1268) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [19/47fe26] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_42.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1269) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8c/c2c157] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_41.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1271) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [57/bad78e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_44.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1272) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [89/fade18] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_46.fa.gz) [ 75%] 949 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1272) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/4dc7cf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_37.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1273) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [41/20909f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_47.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1275) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5d/a599b1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_45.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1276) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [24/0afee9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_5.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1277) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1c/9ee986] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_51.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1278) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [41/743e35] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_49.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1279) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5b/c3a5c0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_50.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1281) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f9/a41f49] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_56.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1282) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e7/0a0242] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_54.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1284) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7c/7c3aa4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_57.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1285) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [97/48398f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_58.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1287) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [73/c09fd7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_59.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1288) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/c32bc5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_6.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1290) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [09/347f27] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_62.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1291) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [35/422578] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_7.fa.gz) [ 75%] 950 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1291) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [85/7a46bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_42.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1292) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [39/d4fbba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_8.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1294) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [34/73b890] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.0.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1295) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [63/665f5c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1340.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1297) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cb/61ed40] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.131.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1299) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [78/a34e76] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1430.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1300) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bc/4d1682] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1574.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1301) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8b/eb37f7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1481.fa.gz) [ 76%] 960 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1301) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [81/a905fb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_49.fa.gz) [ 76%] 967 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1303) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b0/520862] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1621.fa.gz) [ 76%] 967 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1304) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [da/dcc355] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1648.fa.gz) [ 76%] 967 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1305) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a6/a05da9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1753.fa.gz) [ 76%] 967 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1307) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [49/e06b48] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1995.fa.gz) [ 76%] 967 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1308) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4d/7d932a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2048.fa.gz) [ 76%] 967 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1309) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8f/56064f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.222.fa.gz) [ 77%] 974 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1310) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3f/85a46d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2223.fa.gz) [ 77%] 974 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1311) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [95/2449e1] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2300.fa.gz) [ 77%] 974 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1313) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [95/f5dd6b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2526.fa.gz) [ 77%] 974 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1315) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [75/2c7957] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2683.fa.gz) [ 77%] 974 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1315) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [63/ec02e8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-CONCOCT-sample3_57.fa.gz) [ 77%] 975 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1316) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/219968] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2658.fa.gz) [ 77%] 975 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1317) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [57/7e56fd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2766.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1319) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [71/308b69] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.280.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1320) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cc/c8124a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2880.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1321) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a1/052e49] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2946.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1323) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a3/de2839] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.295.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1325) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8e/562b9e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3234.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1326) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9a/bd2cd5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3283.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1328) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1d/dd85bb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3341.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1329) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ee/38488b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3372.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1330) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b7/2d03dc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.34.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1331) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [86/862ae3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3527.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1332) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ac/556054] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.354.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1334) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cb/e293e9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3620.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1335) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c3/563763] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3769.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1337) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [70/a2088b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3668.fa.gz) [ 80%] 1007 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1337) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [09/810c50] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_34.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1338) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2c/158274] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.377.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1339) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0f/67187e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3847.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1341) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f7/5cf3b0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3984.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1342) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [86/a00627] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.3908.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1343) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [be/bd1c42] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4102.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1344) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [55/e41712] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6322.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1345) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6e/fa325e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4150.fa.gz) [ 81%] 1019 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1345) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [00/deebdf] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_35.fa.gz) [ 81%] 1020 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1345) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [7d/384dc4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_36.fa.gz) [ 81%] 1021 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1346) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2e/c7e0c5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.418.fa.gz) [ 81%] 1021 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1347) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5c/4278bc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4183.fa.gz) [ 81%] 1021 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1348) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2a/361858] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4276.fa.gz) [ 81%] 1021 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1348) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [89/fade18] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_46.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1349) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [df/fb5dbe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4340.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1350) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [93/e9a22c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4384.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1351) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/4ee651] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4421.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1352) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c2/75b2ba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4469.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1353) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [81/0b12f5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4447.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1355) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/62da93] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4530.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1357) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bc/3e250c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4750.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1358) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bf/a8e17e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4910.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1359) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/72f3de] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5004.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1360) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ca/1aa030] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5049.fa.gz) [ 82%] 1031 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1360) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [35/422578] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-CONCOCT-sample3_7.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1362) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cf/006529] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5552.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1364) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [34/e49063] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5770.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1365) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [82/fde84d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5943.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1366) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1a/2abcee] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5997.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1367) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f0/753d74] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6163.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1369) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1f/7e499d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6386.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1371) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/109c3a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4796.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1373) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f8/6ba61b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4870.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1374) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d7/c7aa6e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4982.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1376) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [96/b86f9f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5308.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1378) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [66/608b47] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6604.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1379) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ea/e4088a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5495.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1381) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cf/6e8495] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.574.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1382) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a0/03ac0e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5597.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1384) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5e/4d12cc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5678.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1386) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/631fc4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8309.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1387) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ac/01ce20] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6098.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1388) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [07/dd5461] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6255.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1389) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [88/356e22] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6858.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1391) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [18/40d365] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6913.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1391) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [18/40d365] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6913.fa.gz) [ 83%] 1050 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1391) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [8b/eb37f7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.1481.fa.gz) [ 84%] 1060 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1392) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [87/b7ac63] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5661.fa.gz) [ 84%] 1060 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1394) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [11/739775] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.669.fa.gz) [ 84%] 1060 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1396) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e1/e32785] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6718.fa.gz) [ 84%] 1060 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1397) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/650582] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6785.fa.gz) [ 84%] 1060 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1399) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [87/afe81d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6550.fa.gz) [ 84%] 1060 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1401) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [67/45dbea] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7021.fa.gz) [ 84%] 1060 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1401) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4d/7d932a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2048.fa.gz) [ 84%] 1067 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1402) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3f/85a46d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2223.fa.gz) [ 84%] 1068 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1404) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/319c9d] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6800.fa.gz) [ 84%] 1068 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1406) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [23/007d87] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7252.fa.gz) [ 84%] 1068 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1407) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [48/f59471] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7475.fa.gz) [ 84%] 1068 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1409) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [af/bac64b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7300.fa.gz) [ 84%] 1068 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1409) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [75/2c7957] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2683.fa.gz) [ 85%] 1074 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1411) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2d/c173ba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7503.fa.gz) [ 85%] 1074 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1412) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [97/d8764b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7573.fa.gz) [ 85%] 1074 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1413) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f7/9147f3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7546.fa.gz) [ 85%] 1074 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1414) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/71ccbe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7611.fa.gz) [ 85%] 1074 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1415) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fc/8f95e9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7656.fa.gz) [ 85%] 1074 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1415) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [04/219968] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2658.fa.gz) [ 85%] 1075 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1416) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/f33b41] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7671.fa.gz) [ 85%] 1075 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1416) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [57/7e56fd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.2766.fa.gz) [ 85%] 1076 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1416) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2c/158274] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.377.fa.gz) [ 87%] 1097 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1416) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [6e/fa325e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4150.fa.gz) [ 87%] 1104 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1416) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2e/c7e0c5] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.418.fa.gz) [ 87%] 1105 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1417) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e6/3fe940] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7746.fa.gz) [ 87%] 1105 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1417) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [df/fb5dbe] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.4340.fa.gz) [ 88%] 1108 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1418) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1e/07f9b3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7709.fa.gz) [ 88%] 1108 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1419) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [a7/a669da] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7776.fa.gz) [ 88%] 1108 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1420) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [79/1a7ea9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7819.fa.gz) [ 88%] 1108 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1421) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [dc/d30bed] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7842.fa.gz) [ 88%] 1108 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1422) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c9/649196] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7861.fa.gz) [ 88%] 1108 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1423) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [31/2079ef] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7891.fa.gz) [ 88%] 1108 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1423) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ca/1aa030] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.5049.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1424) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/3777a7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7923.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1426) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1e/89a785] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7951.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1428) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c9/024ffd] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8084.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1430) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b0/ee953a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8181.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1432) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e9/361558] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8253.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1433) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [f8/cb7807] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8260.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1435) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [75/9161d3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8293.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1436) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3d/d25b2f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8315.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1438) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [50/112f2b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8370.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1440) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [bd/8e3e1a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8384.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1441) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3e/65779f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.842.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1444) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e5/df8ae6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8450.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1446) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e0/e521b9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3650.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1447) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [43/c24677] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8462.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1449) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e1/e48dd6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8476.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1451) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3c/089952] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8518.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1453) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [10/8d9ff4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8536.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1454) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [89/b75854] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8538.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1456) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [06/a92543] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8546.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1458) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b9/7551ba] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8549.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1459) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [4b/daf704] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8557.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1460) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5f/fc6982] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8565.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1460) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5f/fc6982] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8565.fa.gz) [ 89%] 1119 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1460) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [18/40d365] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.6913.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1462) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [32/4e1fc6] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.938.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1464) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [84/4f3efa] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.218.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1466) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [62/bbfcbb] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.2751.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1467) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e9/b533c4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.2831.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1469) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/b33510] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.2884.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1470) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [c8/aba5c4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.2969.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1471) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [46/b02719] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3048.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1472) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [57/90a7a4] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3067.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1473) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [2d/2654fc] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3097.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1475) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [27/265e49] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3128.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1477) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e8/e6eb60] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3259.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1478) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [d1/5ab59c] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3284.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1479) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [39/f403e0] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3364.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1480) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [93/7b509f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3299.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1481) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1f/97e15f] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3383.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1483) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [27/39ae13] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3499.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1485) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [cd/6b3535] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3519.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1487) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [05/6a756a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3593.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1489) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [3a/ef219a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3609.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1490) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [43/38688a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3620.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1491) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b4/01f0db] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3622.fa.gz) [ 91%] 1150 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1491) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [67/45dbea] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7021.fa.gz) [ 92%] 1160 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1492) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [81/081998] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3630.fa.gz) [ 92%] 1160 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1494) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [9e/c96b74] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3636.fa.gz) [ 92%] 1160 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1495) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [0b/3b64d8] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3639.fa.gz) [ 92%] 1160 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1497) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [27/ae108e] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3660.fa.gz) [ 92%] 1160 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [ 92%] 1160 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [af/bac64b] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7300.fa.gz) [ 92%] 1168 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [fc/8f95e9] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7656.fa.gz) [ 93%] 1174 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [38/f33b41] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7671.fa.gz) [ 93%] 1175 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [e6/3fe940] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7746.fa.gz) [ 93%] 1176 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [1e/07f9b3] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7709.fa.gz) [ 93%] 1177 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [60/3777a7] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.7923.fa.gz) [ 94%] 1183 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [5f/fc6982] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (METAMDBG-COMEBin-sample3.8565.fa.gz) [ 96%] 1219 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [43/38688a] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3620.fa.gz) [ 99%] 1249 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [b4/01f0db] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3622.fa.gz) [ 99%] 1250 of 1257 [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [100%] 20 of 20 Plus 9 more processes waiting for tasks… executor > sge (1498) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [28/8c2b61] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.noclass.3) [ 48%] 20 of 41 Plus 9 more processes waiting for tasks… executor > sge (1499) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [34/f8a503] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.009) [ 7%] 20 of 265 Plus 6 more processes waiting for tasks… executor > sge (1500) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/496280] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.025) [ 3%] 20 of 518 Plus 6 more processes waiting for tasks… executor > sge (1501) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [70/d623cb] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.002) [ 2%] 20 of 801 Plus 6 more processes waiting for tasks… executor > sge (1502) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [b7/738a6f] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.023) [ 1%] 20 of 1091 Plus 6 more processes waiting for tasks… executor > sge (1504) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a6/a33504] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.046) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1505) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e9/3aecf3] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.017) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1507) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c6/848d7e] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.016) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1508) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [d9/3f281c] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.012) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1509) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [89/ed5d5a] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.010) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1511) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [16/7782d2] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.019) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1512) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f4/394022] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.013) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1513) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a5/0c3012] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.029) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1514) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [94/1707fd] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.007) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1516) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/ac1388] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.003) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1517) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7f/258c94] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.005) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1519) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [d3/365fc9] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.008) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1520) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a2/dbc463] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.036) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1521) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [1c/5179f2] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.040) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1522) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a4/fb29ba] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.011) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1523) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [07/860abc] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.027) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1525) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e0/f3ab39] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.022) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1526) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [92/547739] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.047) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1528) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [8c/174bbf] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.044) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1529) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a7/1349d1] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.042) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1531) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [d8/3768c5] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.045) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1533) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c0/95bdd5] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.034) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1534) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ba/c3f91f] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.041) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1536) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [47/1ae7ec] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.015) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1537) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c1/d0bce5] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.028) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1539) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3e/45b12a] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.038) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1540) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [02/0a323b] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.043) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1542) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [- ] NFCORE_MAG:MAG:QUAST_BINS [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a2/e4a1f9] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_26) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1544) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [01/af4c0d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a2/e4a1f9] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_26) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1545) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [01/af4c0d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [0c/372f0b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.017) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1546) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [01/af4c0d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c3/424728] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.011) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1547) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [01/af4c0d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [18/5c5b8a] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.001) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1548) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [01/af4c0d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [b0/ae5ddc] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.004) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1549) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [01/af4c0d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c6/0dfbd5] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.005) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1550) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [01/af4c0d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [94/9c02cd] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.009) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1552) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [89/53c9db] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample1) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [6a/35ac10] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.021) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1553) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [89/53c9db] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample1) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [92/04320b] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.001) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1554) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [ac/78ded2] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample4) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [92/04320b] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.001) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1555) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [ac/78ded2] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample4) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/b1db95] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.020) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1556) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [ac/78ded2] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample4) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [59/21c3f7] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.030) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1557) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3b/239d23] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [59/21c3f7] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.030) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1558) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3b/239d23] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [06/5865be] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.007) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1560) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3b/239d23] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [6e/02d765] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.013) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1561) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3b/239d23] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [00/eb7eb3] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.018) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1562) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [00/eb7eb3] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.018) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1563) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [84/8e73ee] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.015) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1564) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/56096f] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.010) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1565) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/56096f] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.010) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1566) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f5/2aa989] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.014) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1567) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [12/5b1459] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.020) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1568) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [47/8e93a4] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.012) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1569) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c5/96d833] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.003) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1570) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3e/ef6e07] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.016) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1572) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [15/de8cb2] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.006) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1574) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [94/8c35a3] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_0) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1575) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [cf/1e2382] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_11) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1576) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [67/297c14] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_1) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1578) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [fd/444cbd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [67/297c14] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_1) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1580) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [11/56419f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [1a/7920d3] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.002) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1582) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [11/56419f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [91/61a34a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_17) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1583) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [11/56419f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MetaBAT2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [43/4ef394] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_14) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1585) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [43/4ef394] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_14) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1586) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [09/26a912] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_15) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1588) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [10/734a48] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_21) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1589) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fe/8cc1b5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_10) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1590) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [48/bfd8d5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_66) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1592) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [02/ff2236] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_69) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1594) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [55/d561dd] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_18) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1595) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a8/d1e792] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_23) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1597) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [10/2496ea] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_22) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1598) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f9/7a1471] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_25) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1598) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f9/7a1471] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_25) [ 1%] 20 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1598) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [34/f8a503] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.009) [ 1%] 21 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1599) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/ac1388] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.003) [ 1%] 24 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1601) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [cd/75cf9f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample4) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [bb/86c681] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_2) [ 1%] 24 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1602) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [cd/75cf9f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample4) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [8a/289b6c] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_27) [ 1%] 24 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1603) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [cd/75cf9f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample4) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 2%] 26 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1604) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 2%] 26 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1604) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 2%] 26 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1604) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [94/8c35a3] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_0) [ 2%] 27 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1605) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [97/cbe8c5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_3) [ 2%] 27 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1605) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [97/cbe8c5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_3) [ 2%] 27 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1605) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [97/cbe8c5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_3) [ 2%] 27 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1605) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 0%] 0 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [97/cbe8c5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_3) [ 2%] 27 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1605) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [9f/0af741] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample4) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [02/0a323b] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.043) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1606) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [02/0a323b] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.043) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1607) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [4e/237f24] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_33) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1608) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [4e/237f24] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_33) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1609) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [39/f194b7] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_34) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1610) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [da/e41bda] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_32) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1611) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [96/6684ea] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_35) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1612) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [b4/266f31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample3) [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [96/6684ea] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_35) [ 2%] 34 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1613) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [b0/0e8cdf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample2) [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [47/8e93a4] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.012) [ 2%] 35 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1614) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [5c/665827] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MetaBAT2-sample4) [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [47/8e93a4] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.012) [ 2%] 35 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1614) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [5c/665827] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MetaBAT2-sample4) [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [04/1123eb] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_12) [ 2%] 36 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1615) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [a6/9510c7] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MetaBAT2-sample3) [ 0%] 0 of 28 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 3%] 1 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [04/1123eb] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_12) [ 2%] 36 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1616) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [bd/a29942] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample4) [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 15%] 5 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 3%] 41 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1617) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [dd/d8ae1c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MetaBAT2-sample2) [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 15%] 5 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 3%] 41 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1619) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 15%] 5 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 3%] 41 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1621) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [8a/06780a] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample3) [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 15%] 5 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 3%] 41 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1622) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [c6/859ec3] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample2) [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 15%] 5 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 3%] 41 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1624) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 0%] 0 of 28 [a0/fb8f12] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample2) [ 15%] 5 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3d/c30c1b] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_29) [ 3%] 41 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1624) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [97/cbe8c5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_3) [ 3%] 42 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1625) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a9/18894d] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_36) [ 3%] 42 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1626) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/230268] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_4) [ 3%] 42 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1627) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/230268] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_4) [ 3%] 42 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1627) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/230268] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_4) [ 3%] 42 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1627) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/230268] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_4) [ 3%] 42 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1627) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [ca/d9caaa] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample3) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ba/c3f91f] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.041) [ 3%] 49 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1629) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [2f/a686ae] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample2) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7f/380c8e] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_40) [ 3%] 49 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1630) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7f/380c8e] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_40) [ 3%] 49 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1632) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7c/7d2e97] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_41) [ 3%] 49 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1633) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 0%] 0 of 28 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c2/42b145] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_38) [ 3%] 49 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1634) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f5/c2d802] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample1) [ 0%] 0 of 28 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c2/42b145] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_38) [ 3%] 49 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1634) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f5/c2d802] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample1) [ 0%] 0 of 28 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [39/f194b7] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_34) [ 3%] 50 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1634) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [b4/266f31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample3) [ 3%] 1 of 28 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [39/f194b7] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_34) [ 3%] 50 of 1277 Plus 6 more processes waiting for tasks… executor > sge (1634) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [b4/266f31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample3) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [96/6684ea] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_35) [ 3%] 51 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1635) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e9/2926e3] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample2) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [96/6684ea] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_35) [ 3%] 51 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1636) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e9/2926e3] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample2) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e6/ac5e06] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_39) [ 3%] 51 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1636) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e9/2926e3] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample2) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [77/70b0a9] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_16) [ 4%] 52 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1637) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e9/2926e3] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample2) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [db/71a4c3] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_29) [ 4%] 52 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1638) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [30/702270] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample4) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [db/71a4c3] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_29) [ 4%] 52 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1638) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [30/702270] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample4) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e5/e316c3] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_20) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1639) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [30/702270] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample4) [ 3%] 1 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 21%] 7 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e5/e316c3] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_20) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1639) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e5/e316c3] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_20) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1641) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f0/0f0656] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_42) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1642) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [51/3d6553] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_44) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1643) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e7/19b145] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_43) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1644) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [2c/e0724e] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_49) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1644) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [2c/e0724e] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_49) [ 4%] 53 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1644) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [dc/3d5443] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample2) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/230268] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_4) [ 4%] 54 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1645) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/230268] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_4) [ 4%] 54 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1645) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [08/230268] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_4) [ 4%] 54 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1646) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ca/e6be31] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample3) [ 17%] 5 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 3 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [4f/dea111] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_47) [ 4%] 55 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1646) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [5c/665827] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MetaBAT2-sample4) [ 25%] 7 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 4 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [4f/dea111] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_47) [ 4%] 55 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1647) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [5c/665827] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MetaBAT2-sample4) [ 25%] 7 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 4 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [13/b7b596] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_46) [ 4%] 55 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1648) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [95/c8f9fc] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample1) [ 25%] 7 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 4 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 25%] 8 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [13/b7b596] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_46) [ 4%] 55 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1648) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [a6/9510c7] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MetaBAT2-sample3) [ 28%] 8 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 5 [fd/444cbd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MetaBAT2-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [02/ff2236] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_69) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1650) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [4c/ab1265] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample1) [ 28%] 8 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 5 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [02/ff2236] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_69) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1652) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [4c/ab1265] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample1) [ 28%] 8 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 5 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f0/18186c] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_5) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1654) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [4c/ab1265] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample1) [ 28%] 8 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 5 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [da/a1cc6a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_54) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1654) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [30/702270] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample4) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [da/a1cc6a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_54) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1655) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [30/702270] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample4) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [cf/229be2] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_55) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1656) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [aa/8f88e8] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample3) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [cf/229be2] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_55) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1657) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [aa/8f88e8] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample3) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [cf/229be2] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_55) [ 4%] 58 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1657) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [aa/8f88e8] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample3) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c4/cd93b5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_37) [ 4%] 62 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1658) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [aa/8f88e8] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample3) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [9c/ba8e8c] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_52) [ 4%] 62 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1659) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [aa/8f88e8] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample3) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [dc/38a15a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_50) [ 4%] 62 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1660) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [aa/8f88e8] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample3) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a9/27f22f] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_57) [ 4%] 62 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1661) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [7d/bce7bf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample3) [ 39%] 11 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 8 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a9/27f22f] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_57) [ 4%] 62 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1661) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 57%] 16 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 13 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [4e/237f24] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_33) [ 4%] 63 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1662) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 57%] 16 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 13 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [81/c311f4] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_56) [ 4%] 63 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1663) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 57%] 16 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 13 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [81/c311f4] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_56) [ 4%] 63 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1664) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 57%] 16 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 13 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [84/c78014] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_58) [ 4%] 63 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1665) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 57%] 16 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 13 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [98/111c54] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_39) [ 4%] 63 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1666) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 57%] 16 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 13 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [8f/018a29] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_61) [ 4%] 63 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1667) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [e4/bd557f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample4) [ 57%] 16 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 13 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [94/e679db] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_60) [ 4%] 63 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1667) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [f0/a16b96] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-MaxBin2-sample1) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e6/ac5e06] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_39) [ 5%] 64 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1669) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e6/ac5e06] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_39) [ 5%] 64 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1669) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fe/8cc1b5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_10) [ 5%] 65 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1669) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [48/bfd8d5] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_66) [ 5%] 67 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1670) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [95/824f7e] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_6) [ 5%] 67 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1671) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [0a/49e6a4] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_64) [ 5%] 67 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1671) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f4/394022] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.013) [ 5%] 68 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1671) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [31/e07c48] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.032) [ 5%] 69 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1671) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3f/2e45c7] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.037) [ 5%] 70 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1671) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 31%] 10 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c6/0dfbd5] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.005) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1671) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [89/53c9db] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample1) [ 34%] 11 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c6/0dfbd5] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.005) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1672) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [89/53c9db] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample1) [ 34%] 11 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [9d/e25942] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_63) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1673) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [46/e6c3ec] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample2) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [89/53c9db] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample1) [ 34%] 11 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [9d/e25942] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_63) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1674) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [46/e6c3ec] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample2) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 34%] 11 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [9d/e25942] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_63) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1675) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [46/e6c3ec] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample2) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 34%] 11 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7e/741b23] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_62) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1677) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [46/e6c3ec] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample2) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 34%] 11 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/cff7b9] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_65) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1678) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [46/e6c3ec] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample2) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/cff7b9] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_65) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1679) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [09/253895] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-MaxBin2-sample1) [ 60%] 17 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 14 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/cff7b9] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_65) [ 5%] 72 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1679) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [95/c8f9fc] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample1) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 15 [92/fe9cbc] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [13/b7b596] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_46) [ 5%] 74 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1680) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [95/c8f9fc] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample1) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 15 [02/e6dc36] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [13/b7b596] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_46) [ 5%] 74 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1681) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [da/2a490f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample2) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 15 [02/e6dc36] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [13/b7b596] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_46) [ 5%] 74 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1682) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [da/2a490f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample2) [ 64%] 18 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 15 [02/e6dc36] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7e/4f2217] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_70) [ 5%] 74 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1682) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [4c/ab1265] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample1) [ 67%] 19 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 16 [02/e6dc36] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7e/4f2217] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_70) [ 5%] 74 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1683) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [4c/ab1265] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample1) [ 67%] 19 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 16 [02/e6dc36] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [41/ef9a24] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_8) [ 5%] 74 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1683) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [aa/8f88e8] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample3) [ 71%] 20 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 17 [02/e6dc36] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [cf/229be2] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_55) [ 5%] 75 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1685) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 71%] 20 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 17 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [cf/229be2] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_55) [ 5%] 75 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1685) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [7d/bce7bf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample3) [ 75%] 21 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 17 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [cf/229be2] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_55) [ 5%] 75 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1686) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [7d/bce7bf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample3) [ 75%] 21 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 18 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [21/90e9b6] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_26) [ 5%] 75 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1686) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [7d/bce7bf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample3) [ 75%] 21 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 18 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [81/c311f4] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_56) [ 5%] 76 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1687) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [7d/bce7bf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample3) [ 75%] 21 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 18 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [05/0a9ead] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_7) [ 5%] 76 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1687) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [7d/bce7bf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample3) [ 75%] 21 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 18 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [05/0a9ead] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_7) [ 5%] 76 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1687) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [7d/bce7bf] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample3) [ 75%] 21 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 18 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a6/a33504] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.046) [ 6%] 77 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1687) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 78%] 22 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 19 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e0/f3ab39] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.022) [ 6%] 79 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1688) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 78%] 22 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 19 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ab/bda5d8] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_0) [ 6%] 79 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1690) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 78%] 22 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 19 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/4af313] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_12) [ 6%] 79 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1691) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [62/e13220] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample4) [ 78%] 22 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 19 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/4af313] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_12) [ 6%] 79 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1691) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [46/e6c3ec] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-CONCOCT-sample2) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/4af313] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_12) [ 6%] 79 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1692) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/4af313] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_12) [ 6%] 79 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1692) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [98/111c54] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_39) [ 6%] 81 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1693) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [37/ac6b5f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_10) [ 6%] 81 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1694) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [b9/06dacb] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_14) [ 6%] 81 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1694) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [b9/06dacb] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_14) [ 6%] 81 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1695) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e8/1391a2] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_11) [ 6%] 83 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1696) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [73/1d1807] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_16) [ 6%] 83 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1696) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [18/5c5b8a] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.001) [ 6%] 84 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1696) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [12/5b1459] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.020) [ 6%] 88 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1697) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [3e/ef6e07] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.016) [ 7%] 90 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1698) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 37%] 12 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f3/f34342] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.008) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1698) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [94/8fd332] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample4) [ 40%] 13 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f3/f34342] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.008) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1698) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [94/8fd332] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample4) [ 40%] 13 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f3/f34342] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.008) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1698) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f3/f34342] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.008) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1699) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [18/4c07f8] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_19) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1700) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [09/69c4dc] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_17) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1701) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [9b/bba952] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_18) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1702) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a8/b20e50] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_2) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1703) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [60/f322b5] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_20) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1704) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7e/ca40cb] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_61) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1705) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [19/4ddbe8] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_22) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1706) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [4e/087ed0] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_21) [ 7%] 91 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1706) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [9c/ba8e8c] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_52) [ 7%] 94 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1707) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/0e5632] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_24) [ 7%] 94 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1708) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [1e/cf45b6] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_23) [ 7%] 94 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1709) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 82%] 23 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 20 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fb/2a7e7f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_28) [ 7%] 94 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1709) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 89%] 25 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 22 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fb/2a7e7f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_28) [ 7%] 94 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1710) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [39/1daf6c] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample4) [ 89%] 25 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 22 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/3e6553] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_25) [ 7%] 94 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1711) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [ 89%] 25 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 22 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/3e6553] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_25) [ 7%] 94 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1711) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [ 89%] 25 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 22 [c6/125b50] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f0/0f0656] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_42) [ 7%] 95 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1712) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [ 89%] 25 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 22 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f0/0f0656] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_42) [ 7%] 95 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1712) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [da/2a490f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample2) [ 92%] 26 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 23 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f9/7a1471] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_25) [ 7%] 96 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1714) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [da/2a490f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample2) [ 92%] 26 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 23 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [00/021b32] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_30) [ 7%] 96 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1714) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [da/2a490f] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-CONCOCT-sample2) [ 92%] 26 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 23 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [00/021b32] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_30) [ 7%] 96 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1714) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [37/ac6b5f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_10) [ 7%] 97 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1715) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [29/3d0638] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_32) [ 7%] 97 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1716) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [ 43%] 14 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [5d/574ebd] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_31) [ 7%] 97 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1716) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [2f/a686ae] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample2) [ 46%] 15 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7f/380c8e] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_40) [ 7%] 98 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1718) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [2f/a686ae] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample2) [ 46%] 15 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fc/2b4240] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_3) [ 7%] 98 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1718) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [09/b7c09c] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample1) [ 50%] 16 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7e/741b23] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_62) [ 7%] 100 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1719) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [09/b7c09c] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample1) [ 50%] 16 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [61/c02c50] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_34) [ 7%] 100 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1721) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [09/b7c09c] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample1) [ 50%] 16 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [48/edc21f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_36) [ 7%] 100 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1721) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [09/b7c09c] NFCORE_MAG:MAG:QUAST_BINS (FLYE-MaxBin2-unclassified-unrefined_unbinned-sample1) [ 50%] 16 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [48/edc21f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_36) [ 7%] 100 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1721) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c1/d0bce5] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.028) [ 7%] 101 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1722) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [dc/38a15a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_50) [ 8%] 104 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1723) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [46/901aa5] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_40) [ 8%] 104 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1724) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [69/03b733] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_37) [ 8%] 104 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1725) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [8c/570a26] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_38) [ 8%] 104 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1726) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/b11194] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_45) [ 8%] 104 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1726) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [9b/bba952] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_18) [ 8%] 106 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1728) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [8e/09f661] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_46) [ 8%] 106 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1728) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [21/90e9b6] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_26) [ 8%] 107 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1729) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [ef/5da168] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (FLYE-COMEBin-sample2) [ 96%] 27 of 28 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 24 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f4/bdd84f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_43) [ 8%] 107 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1729) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f4/bdd84f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_43) [ 8%] 107 of 1277 Plus 5 more processes waiting for tasks… executor > sge (1730) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a8/d6b5c4] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_4) [ 8%] 107 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1730) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [f8/40b4ca] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_13) [ 8%] 108 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1731) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [af/4c0f76] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_41) [ 8%] 108 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1731) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [6b/c5c446] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_27) [ 8%] 109 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1732) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ac/db4a1f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_47) [ 8%] 109 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1732) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [8f/018a29] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_61) [ 8%] 110 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1733) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e6/a78967] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_49) [ 8%] 110 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1733) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/cff7b9] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_65) [ 8%] 112 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1735) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ad/ecc0cc] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_52) [ 8%] 112 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1735) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [48/edc21f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_36) [ 8%] 114 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1737) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [1f/75b198] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_51) [ 8%] 114 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1737) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [1f/75b198] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_51) [ 8%] 114 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1737) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [40/c400b4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample1) [ 53%] 17 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [91/61a34a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_17) [ 9%] 116 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1739) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/7c48a4] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_54) [ 9%] 116 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1740) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [d1/459bb9] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_56) [ 9%] 116 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1740) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [69/03b733] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_37) [ 9%] 118 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1741) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [1b/cce8b1] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_53) [ 9%] 118 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1742) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [5d/1cf6a5] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_57) [ 9%] 118 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1742) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fc/2b4240] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_3) [ 9%] 121 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1744) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [2d/ebdd1b] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_55) [ 9%] 121 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1745) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ad/408570] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_60) [ 9%] 121 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1745) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [25/84699a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_45) [ 9%] 122 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1746) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [22/3dd63b] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_59) [ 9%] 122 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1746) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [af/4c0f76] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_41) [ 9%] 123 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1747) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [81/c4fa6f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_64) [ 9%] 123 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1747) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ac/db4a1f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_47) [ 9%] 124 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1748) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [55/cb83bd] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample3) [ 56%] 18 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a4/d9a2ba] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_65) [ 9%] 124 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1749) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [cd/75cf9f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample4) [ 59%] 19 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [d5/f20a1a] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_62) [ 9%] 125 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1750) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [cd/75cf9f] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample4) [ 59%] 19 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [69/fa7c29] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_66) [ 9%] 125 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1750) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [0a/49e6a4] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_64) [ 9%] 126 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1752) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [d9/919caf] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.598) [ 9%] 126 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1752) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [d9/919caf] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.598) [ 9%] 126 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1753) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fd/469c64] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_8) [ 9%] 127 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1753) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [fd/469c64] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_8) [ 9%] 127 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1753) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [0c/372f0b] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.017) [ 10%] 128 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1754) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [41/ef9a24] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_8) [ 10%] 130 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1755) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e1/81abc3] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_6) [ 10%] 130 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1756) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [db/334ded] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_9) [ 10%] 130 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1756) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [3c/482814] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-MaxBin2-unclassified-unrefined-sample3) [ 62%] 20 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [- ] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [da/a1cc6a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_54) [ 10%] 132 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1757) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [da/a1cc6a] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_54) [ 10%] 132 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1759) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [b6/3cfe04] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1587) [ 10%] 132 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1759) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [99/7c48a4] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_54) [ 10%] 134 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1760) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [64/3d0c11] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1350) [ 10%] 134 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1761) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [84/c241a4] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1096) [ 10%] 134 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1761) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [a4/d9a2ba] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_65) [ 10%] 135 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1762) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7b/4e6932] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1188) [ 10%] 135 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1762) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [69/fa7c29] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_66) [ 10%] 140 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1763) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [c0/64c901] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.0) [ 10%] 140 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1765) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [ee/606086] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1269) [ 10%] 140 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1767) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [46/9908cf] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1332) [ 10%] 140 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1767) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [46/9908cf] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1332) [ 10%] 140 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1769) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7a/a38615] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1314) [ 11%] 142 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1769) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [7a/a38615] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1314) [ 11%] 142 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1769) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [00/021b32] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_30) [ 11%] 143 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1770) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e9/41e9e7] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1185) [ 11%] 143 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1770) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [e9/41e9e7] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1185) [ 11%] 143 of 1277 Plus 4 more processes waiting for tasks… executor > sge (1770) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 [81/c4fa6f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_64) [ 11%] 144 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details executor > sge (1770) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [81/c4fa6f] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_64) [ 11%] 144 of 1277 Plus 4 more processes waiting for tasks… Execution cancelled -- Finishing pending tasks before exit ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [ba/e3418d] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample1) [ 65%] 21 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [32/18479e] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1371) [ 11%] 144 of 1277 Plus 4 more processes waiting for tasks… Execution cancelled -- Finishing pending tasks before exit ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 68%] 22 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [32/18479e] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1371) [ 11%] 144 of 1277 Plus 4 more processes waiting for tasks… Execution cancelled -- Finishing pending tasks before exit ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 68%] 22 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [56/3d28fc] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_48) [ 11%] 146 of 1277 Plus 4 more processes waiting for tasks… Execution cancelled -- Finishing pending tasks before exit ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 68%] 22 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [8e/09f661] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_46) [ 11%] 148 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 68%] 22 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [8e/09f661] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_46) [ 11%] 148 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 68%] 22 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ad/408570] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_60) [ 11%] 150 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 68%] 22 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ad/408570] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_60) [ 11%] 150 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [73/63e9f6] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample4) [ 68%] 22 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [10/2496ea] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_22) [ 11%] 152 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 71%] 23 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [a8/b20e50] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_2) [ 12%] 155 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 71%] 23 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [7b/4e6932] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1188) [ 12%] 156 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 71%] 23 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [f5/70bb81] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_50) [ 12%] 157 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [7d/8a51c4] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample3) [ 71%] 23 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [73/1d1807] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_16) [ 12%] 158 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 75%] 24 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [73/1d1807] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_16) [ 12%] 158 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 75%] 24 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [1e/cf45b6] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_23) [ 12%] 159 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 75%] 24 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [a8/d6b5c4] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_4) [ 12%] 160 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [91/dd93e7] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample1) [ 75%] 24 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [c3/229039] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1254) [ 12%] 161 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [c3/229039] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1254) [ 12%] 161 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [e8/1391a2] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_11) [ 12%] 162 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [8c/570a26] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_38) [ 12%] 165 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [f6/f782c4] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_58) [ 13%] 167 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [f5/2aa989] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.014) [ 13%] 168 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [22/3dd63b] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_59) [ 13%] 170 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [29/3d0638] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_32) [ 13%] 171 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [0f/e65b50] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample1) [ 78%] 25 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ad/ecc0cc] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_52) [ 13%] 172 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 81%] 26 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ad/ecc0cc] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_52) [ 13%] 172 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [20/c939c6] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample3) [ 81%] 26 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [0a/078b6e] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_1) [ 13%] 173 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [0a/078b6e] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_1) [ 13%] 173 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ee/4af313] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_12) [ 13%] 174 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [cf/1e2382] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_11) [ 13%] 176 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [a8/d1e792] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_23) [ 13%] 178 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [46/901aa5] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_40) [ 14%] 179 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [84/c241a4] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1096) [ 14%] 180 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [15/de8cb2] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.006) [ 14%] 182 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [b6/3cfe04] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1587) [ 14%] 183 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [35/0b3591] NFCORE_MAG:MAG:QUAST_BINS (FLYE-CONCOCT-unclassified-unrefined-sample4) [ 84%] 27 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ee/b11194] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_45) [ 14%] 187 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ee/b11194] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_45) [ 14%] 187 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [c0/64c901] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.0) [ 14%] 189 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [46/9908cf] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1332) [ 14%] 190 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [e9/3aecf3] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.017) [ 14%] 191 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [a4/fb29ba] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.011) [ 15%] 193 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [6e/02d765] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.013) [ 15%] 194 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [89/e0550c] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_33) [ 15%] 195 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [f9/870c17] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1165) [ 15%] 196 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [e9/41e9e7] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1185) [ 15%] 198 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [32/18479e] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1371) [ 15%] 199 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [6d/0e169f] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1037) [ 15%] 201 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [64/3d0c11] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1350) [ 15%] 202 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ee/606086] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.1269) [ 15%] 204 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [fd/469c64] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_8) [ 16%] 205 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [08/496280] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.025) [ 16%] 206 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [d9/3f281c] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.012) [ 16%] 207 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [d3/365fc9] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.008) [ 16%] 208 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [00/eb7eb3] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.018) [ 16%] 209 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [55/d561dd] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_18) [ 16%] 210 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e4/1bceee] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-CONCOCT-unclassified-unrefined-sample2) [ 87%] 28 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [04/4021fb] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.026) [ 16%] 211 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 93%] 30 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [db/334ded] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_9) [ 16%] 212 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 93%] 30 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [89/cba757] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_5) [ 16%] 213 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 93%] 30 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [ab/bda5d8] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_0) [ 16%] 214 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [dc/fe1786] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample2) [ 93%] 30 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [b9/06dacb] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_14) [ 16%] 216 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [b9/06dacb] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_14) [ 16%] 216 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [d1/459bb9] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_56) [ 16%] 217 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [90/331197] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_44) [ 17%] 218 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [06/5865be] NFCORE_MAG:MAG:PROKKA (FLYE-MaxBin2-sample1.007) [ 17%] 219 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [9d/e25942] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_63) [ 17%] 221 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [19/4ddbe8] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_22) [ 17%] 223 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [b0/8feb33] NFCORE_MAG:MAG:PROKKA (FLYE-CONCOCT-sample1_19) [ 17%] 225 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [3b/1858fd] NFCORE_MAG:MAG:PROKKA (FLYE-COMEBin-sample1.110) [ 17%] 226 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [df/339cfa] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.006) [ 17%] 227 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [e8/1b3bdf] NFCORE_MAG:MAG:QUAST_BINS (FLYE-COMEBin-unclassified-unrefined-sample4) [ 96%] 31 of 32 [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [5d/574ebd] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_31) [ 17%] 228 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [100%] 32 of 32 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [5d/574ebd] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_31) [ 17%] 228 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [100%] 32 of 32 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [16/7782d2] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.019) [ 17%] 229 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [100%] 32 of 32 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [20/9f50e7] NFCORE_MAG:MAG:PROKKA (METAMDBG-CONCOCT-sample1_63) [ 18%] 230 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [100%] 32 of 32 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [99/b1db95] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.020) [ 18%] 231 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [100%] 32 of 32 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [47/1ae7ec] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.015) [ 18%] 232 of 1277 Plus 4 more processes waiting for tasks… ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > sge (1771) [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_RAW - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTP - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_BUILD - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:BOWTIE2_PHIX_REMOVAL_ALIGN - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:FASTQC_TRIMMED - [- ] NFCORE_MAG:MAG:SHORTREAD_PREPROCESSING:CAT_FASTQ - [d3/5764e1] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_RAW (sample2) [100%] 4 of 4 ✔ [3b/3064eb] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:PORECHOP_ABI (sample3) [100%] 4 of 4 ✔ [91/1a9880] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOLYSE (sample3) [100%] 4 of 4 ✔ [b4/3efa1c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:FILTLONG (sample2) [100%] 4 of 4 ✔ [0e/34c04c] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:NANOPLOT_FILTERED (sample2) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:LONGREAD_PREPROCESSING:CAT_FASTQ_LONGREADS - [- ] NFCORE_MAG:MAG:ASSEMBLY:POOL_LONG_READS - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:METASPADES - [- ] NFCORE_MAG:MAG:ASSEMBLY:SHORTREAD_ASSEMBLY:MEGAHIT - [- ] NFCORE_MAG:MAG:ASSEMBLY:HYBRID_ASSEMBLY:METASPADESHYBRID - [04/2e53a4] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:FLYE (sample2) [100%] 4 of 4 ✔ [e4/b34cdd] NFCORE_MAG:MAG:ASSEMBLY:LONGREAD_ASSEMBLY:METAMDBG_ASM (sample1) [100%] 4 of 4 ✔ [- ] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_SHORTREAD_ASSEMBLIES - [07/c3e7f5] NFCORE_MAG:MAG:ASSEMBLY:GUNZIP_LONGREAD_ASSEMBLIES (FLYE-sample2.assembly.fasta.gz) [100%] 8 of 8 ✔ [d7/530793] NFCORE_MAG:MAG:QUAST (FLYE-sample2) [100%] 8 of 8 ✔ [cc/927c52] NFCORE_MAG:MAG:PRODIGAL (sample2) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_BUILD - [- ] NFCORE_MAG:MAG:BINNING_PREPARATION:SHORTREAD_BINNING_PREPARATION:BOWTIE2_ASSEMBLY_ALIGN - [80/5be130] NFCORE_MAG:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_INDEX (8) [100%] 8 of 8 ✔ [bd/8292b2] NFC…:MAG:BINNING_PREPARATION:LONGREAD_BINNING_PREPARATION:MINIMAP2_ASSEMBLY_ALIGN (sample2) [100%] 32 of 32 ✔ [dd/905fb1] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_LONGREAD (sample3) [100%] 8 of 8 ✔ [- ] NFCORE_MAG:MAG:BINNING:METABAT2_JGISUMMARIZEBAMCONTIGDEPTHS_SHORTREAD - [4a/bd8c5c] NFCORE_MAG:MAG:BINNING:CONVERT_DEPTHS (sample3) [100%] 8 of 8 ✔ [57/16481f] NFCORE_MAG:MAG:BINNING:METABAT2_METABAT2 (sample3) [100%] 8 of 8 ✔ [ad/ec7745] NFCORE_MAG:MAG:BINNING:MAXBIN2 (sample2) [100%] 8 of 8 ✔ [c8/3a2f34] NFCORE_MAG:MAG:BINNING:ADJUST_MAXBIN2_EXT (FLYE-sample2) [100%] 8 of 8 ✔ [a4/f19ae3] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CUTUPFASTA (sample3) [100%] 8 of 8 ✔ [5c/9667a9] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCTCOVERAGETABLE (sample3) [100%] 8 of 8 ✔ [98/c43f59] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_CONCOCT (sample2) [100%] 8 of 8 ✔ [64/8dd026] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_MERGECUTUPCLUSTERING (sample2) [100%] 8 of 8 ✔ [b3/7819e6] NFCORE_MAG:MAG:BINNING:FASTA_BINNING_CONCOCT:CONCOCT_EXTRACTFASTABINS (sample2) [100%] 8 of 8 ✔ [97/af2bc6] NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN (sample1) [100%] 8 of 8, ignored: 1 ✔ [79/7b4722] NFCORE_MAG:MAG:BINNING:SEQKIT_STATS (sample3) [100%] 4 of 4 ✔ [9a/7d9c0d] NFCORE_MAG:MAG:BINNING:SPLIT_FASTA (FLYE-MaxBin2-sample2) [100%] 16 of 16 ✔ [ba/399e86] NFCORE_MAG:MAG:BINNING:GUNZIP_BINS (FLYE-COMEBin-sample3.3662.fa.gz) [100%] 1257 of 1257 ✔ [00/a3567c] NFCORE_MAG:MAG:BINNING:GUNZIP_UNBINS (FLYE-MaxBin2-sample2.noclass.5.fa.gz) [100%] 20 of 20 ✔ [d9/5a60ac] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS (METAMDBG-COMEBin-sample3) [100%] 28 of 28 ✔ [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_PLOT [ 0%] 0 of 25 [- ] NFCORE_MAG:MAG:DEPTHS:MAG_DEPTHS_SUMMARY [ 0%] 0 of 1 [8e/0f7172] NFCORE_MAG:MAG:QUAST_BINS (METAMDBG-COMEBin-unclassified-unrefined-sample3) [100%] 32 of 32 ✔ [cd/9af6c8] NFCORE_MAG:MAG:GTDBTK:GTDBTK_DB_PREPARATION (gtdbtk_r226_data.tar.gz) [100%] 1 of 1 ✔ [a6/28fd51] NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY [ 0%] 0 of 1 ✘ [47/1ae7ec] NFCORE_MAG:MAG:PROKKA (METAMDBG-MaxBin2-sample1.015) [ 18%] 232 of 1277 Plus 4 more processes waiting for tasks… -[nf-core/mag] Pipeline completed with errors- ERROR ~ Error executing process > 'NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY' Caused by: Process `NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY` terminated with an error exit status (1) Command executed: summary_gtdbtk.py --extension fa --out gtdbtk_summary.tsv cat <<-END_VERSIONS > versions.yml "NFCORE_MAG:MAG:GTDBTK:GTDBTK_SUMMARY": python: $(python --version 2>&1 | sed 's/Python //g') pandas: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('pandas').version)") END_VERSIONS Command exit status: 1 Command output: (empty) Command error: INFO: Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred INFO: Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred INFO: Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred INFO: Environment variable SINGULARITYENV_TMP is set, but APPTAINERENV_TMP is preferred Either --summaries, --filtered_bins, --failed_bins or --qc_discarded_bins must be specified! Work dir: /net/nfs-ds.sdma.nzcorp.net/srv/nfs/datasets/ds_mr_metagenome/proj/fecalferm/work/a6/28fd5146b40d7c903c9301be037d63 Container: /z/datasets/ds_mr_metagenome/nfcore_pipelines/depot.galaxyproject.org-singularity-pandas-1.4.3.img Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details