Nextflow workflow report

[peaceful_pare]

Error executing process > 'NFCORE_MAG:MAG:ANCIENT_DNA_ASSEMBLY_VALIDATION:PYDAMAGE_ANALYZE (SPAdes-22ds)'

Caused by:
  process hasn't exited

Run times

18-Aug-2026 09:31:49 - 19-Aug-2026 04:55:23 (duration: 19h 23m 34s)

  78 succeeded  

  0 cached  

  0 ignored  

  0 failed (0 retries)  

Nextflow command

nextflow run nf-core/mag -r 5.5.0 -c custom.config -profile singularity --input /projects/standard/mnievesc/zolik006/01_projects/01_PIALQ/02_analysis/03_Metagenomics/01_analysis/04_Denovo/samplesheet.csv --clip_tool adapterremoval --host_fasta /projects/standard/mnievesc/shared/ref_seqs/human_g1k_v37.fasta --host_fasta_bowtie2index /projects/standard/mnievesc/shared/ref_seqs --spades_fix_cpus 32 --megahit_fix_cpu_1 --reads_minlength 30 --binning_map_mode own --min_contig_size 500 --save_assembly_mapped_reads --exclude_unbins_from_postbinning --skip_prokka --run_checkm --run_busco --checkm_db /projects/standard/mnievesc/zolik006/02_refseqs/09_metaWARP/CheckM_DB --refine_bins_dastool --refine_bins_dastool_threshold 0.3 --postbinning_input refined_bins_only --run_gunc --gunc_db /projects/standard/mnievesc/zolik006/02_refseqs/11_gunc/gunc_db_progenomes2.1.dmnd --gtdb_db /projects/standard/mnievesc/zolik006/gtdbtk/share/gtdbtk-2.6.1/db --ancient_dna --outdir /projects/standard/mnievesc/zolik006/01_projects/01_PIALQ/02_analysis/03_Metagenomics/01_analysis/04_Denovo/

CPU-Hours

195.1

Launch directory

/projects/standard/mnievesc/zolik006/01_projects/01_PIALQ/02_analysis/03_Metagenomics/01_analysis/04_Denovo

Work directory

/projects/standard/mnievesc/zolik006/01_projects/01_PIALQ/02_analysis/03_Metagenomics/01_analysis/04_Denovo/work

Project directory

/users/8/zolik006/.nextflow/assets/.repos/nf-core/mag/clones/56abab5b023ce953c9c43fe21090d156ad0e18af

Script name

main.nf

Script ID

71af2049efc0d1fb2f43b2825da454aa

Workflow name

nf-core/mag

Workflow version

5.5.0

Workflow description

Assembly, binning and annotation of metagenomes

Workflow home page

https://github.com/nf-core/mag

Workflow DOI

10.1093/nargab/lqac007

Workflow session

12ec0d63-96da-48a1-ade2-cb63d85cfb68

Workflow repository

https://github.com/nf-core/mag, revision main (commit hash 56abab5b023ce953c9c43fe21090d156ad0e18af)

Workflow profile

singularity

Nextflow version

version 26.04.6, build 12646 (09-07-2026 18:49 UTC)