Nextflow workflow report

[elated_meninsky] (resumed run)

Run times

05-Mar-2026 19:31:39 - 05-Mar-2026 22:32:11 (duration: 3h 32s)

  6 succeeded  

  184 cached  

  4 ignored  

  0 failed (0 retries)  

Nextflow command

nextflow run nf-core/mag -r minimap2-yaml-issue -profile apptainer -c /project2/ckenkel_26/liruiqi/Osedax_meta/CARC_mag_slurm.config --input /project2/ckenkel_26/liruiqi/Osedax_meta/CR180008_Osedax_frankpressi/CR180008_O_frankpressi_samplesheet.csv --outdir /project2/ckenkel_26/liruiqi/Osedax_meta/CR180008_Osedax_frankpressi --gtdb_db /project2/ckenkel_26/liruiqi/mag_out_project2/gtdb226/release226 --host_fasta /project2/ckenkel_26/liruiqi/Osedax_meta/Osedax_frankpressi.fna --host_removal_verysensitive --run_checkm2 --save_hostremoved_reads --skip_megahit --skip_prokka --save_assembly_mapped_reads -resume

CPU-Hours

121.6 (67.3% cached, 27.3% failed)

Launch directory

/project2/ckenkel_26/liruiqi/Osedax_meta/CR180008_Osedax_frankpressi

Work directory

/project2/ckenkel_26/liruiqi/Osedax_meta/CR180008_Osedax_frankpressi/work

Project directory

/home1/liruiqi/.nextflow/assets/nf-core/mag

Script name

main.nf

Script ID

1762f92e8d37b9d1e06d48c0f9275479

Workflow session

d7e636d9-25c4-4b8f-b232-66ce2d86078e

Workflow repository

https://github.com/nf-core/mag, revision minimap2-yaml-issue (commit hash a6d77dd73ce881f4e8571fc6d5ff3b55fb8d438b)

Workflow profile

apptainer

Nextflow version

version 25.10.3, build 10983 (22-01-2026 15:34 UTC)