#!/bin/sh 
#SBATCH --job-name=nf-core_pro
#SBATCH --nodes=5
#SBATCH -A myallocation
#SBATCH --account=user
#SBATCH --qos=genome
#SBATCH --partition=genome
#SBATCH --cpus-per-task=8
#SBATCH -o /cta/users/merve.kaftancioglu/
#SBATCH -e /cta/users/merve.kaftancioglu
### nf-core

##nextflow

module load miniconda/22.9
eval "$(conda shell.bash hook)"
conda activate nextflow
nextflow

##singularity

module load singularity/3.8.4

##nf-core
nextflow run nf-core/chipseq --input /cta/users/merve.kaftancioglu/alternative_scenario/nf-core/nfcore_full.csv --outdir /cta/users/merve.kaftancioglu/alternative_scenario/nf-core/output --genome GRCh38 -profile singularity --read_length 75 -c /cta/users/merve.kaftancioglu/alternative_scenario/nf-core/custom.config