[ec2-user@ip-172-31-19-170 nf-core-modules]$ nf-test test --profile docker,gpu modules/nf-core/parabricks/fq2bammeth/tests/main.nf.test

🚀 nf-test 0.9.3
https://www.nf-test.com
(c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr

Load .nf-test/plugins/nft-bam/0.5.0/nft-bam-0.5.0.jar
Load .nf-test/plugins/nft-compress/0.1.0/nft-compress-0.1.0.jar
Load .nf-test/plugins/nft-vcf/1.0.7/nft-vcf-1.0.7.jar
Load .nf-test/plugins/nft-csv/0.1.0/nft-csv-0.1.0.jar
Load .nf-test/plugins/nft-utils/0.0.7/nft-utils-0.0.7.jar
Load .nf-test/plugins/nft-fastq/0.0.1/nft-fastq-0.0.1.jar
Load .nf-test/plugins/nft-anndata/0.1.0/nft-anndata-0.1.0.jar

Test Process PARABRICKS_FQ2BAMMETH

  Test [c156dbc1] 'SRR389222 single-end [fastq]' PASSED (46.145s)
  Test [82cd1f05] 'SRR389222 single-end [fastq] - stub' PASSED (9.86s)
  Test [88e0012c] 'E.coli paired-end [fastq] - stub' PASSED (9.996s)


SUCCESS: Executed 3 tests in 66.023s

[ec2-user@ip-172-31-19-170 nf-core-modules]$ nf-test test --profile docker,gpu modules/nf-core/parabricks/fq2bam/tests/main.nf.test

🚀 nf-test 0.9.3
https://www.nf-test.com
(c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr

Load .nf-test/plugins/nft-bam/0.5.0/nft-bam-0.5.0.jar
Load .nf-test/plugins/nft-compress/0.1.0/nft-compress-0.1.0.jar
Load .nf-test/plugins/nft-vcf/1.0.7/nft-vcf-1.0.7.jar
Load .nf-test/plugins/nft-csv/0.1.0/nft-csv-0.1.0.jar
Load .nf-test/plugins/nft-utils/0.0.7/nft-utils-0.0.7.jar
Load .nf-test/plugins/nft-fastq/0.0.1/nft-fastq-0.0.1.jar
Load .nf-test/plugins/nft-anndata/0.1.0/nft-anndata-0.1.0.jar

Test Process PARABRICKS_FQ2BAM

  Test [a36da359] 'SRR389222 - fastq - se' PASSED (48.339s)
  Test [e95c0a49] 'SRR389222 - fastq - se - stub' PASSED (10.397s)
  Test [6268f24a] 'sarscov2 - fastq - pe' PASSED (46.529s)
  Test [8b6bfc18] 'sarscov2 - fastq - pe - stub' PASSED (10.8s)
  Test [5ef97de7] 'sarscov2 - fastq - se - cram' PASSED (47.56s)
  Test [4a6e00f9] 'sarscov2 - fastq - pe - cram - stub' PASSED (10.713s)


SUCCESS: Executed 6 tests in 174.389s

[ec2-user@ip-172-31-19-170 nf-core-modules]$