Please use export NXF_VER=nextflow_version to select different version https://www.nextflow.io/docs/latest/config.html#environment-variables ls /sw/bioinfo/Nextflow/latest/rackham/nxf_home/framework/ to check the installed versions Note that NXF_HOME is set to $HOME/.nextflow Please change NXF_HOME to a place in your project directory (export NXF_HOME=yourprojectfolder) WARNING: java.io.tmpdir directory does not exist N E X T F L O W ~ version 25.10.2 Launching `/proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/2_2_0/main.nf` [spontaneous_leakey] DSL2 - revision: 7b71272a23 ------------------------------------------------------ ,--./,-. ___ __ __ __ ___ /,-._.--~' |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/pixelator 2.2.0 ------------------------------------------------------ Input/output options input : samplesheet.csv outdir : ./results Amplicon generation options pna_amplicon_mismatches : 0.1 pna_amplicon_remove_polyg : true Options for pixelator analysis command. pna_analysis_compute_k_cores: true Institutional config options custom_config_base : /proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/2_2_0/../configs/ config_profile_description : UPPMAX (Miarka) cluster profile provided by nf-core/configs. config_profile_contact : Phil Ewels (@ewels) config_profile_url : https://www.uppmax.uu.se/ Generic options trace_report_suffix : 2025-12-11_10-14-58 Core Nextflow options runName : spontaneous_leakey containerEngine : singularity launchDir : /vulpes/proj/snpseq/ngi2016005/nobackup/private/single_cell/YJ4465/pixelgen_run_dir workDir : /vulpes/proj/snpseq/ngi2016005/nobackup/private/single_cell/YJ4465/pixelgen_run_dir/work projectDir : /proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/2_2_0 userName : anderslu profile : singularity configFiles : /proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/2_2_0/nextflow.config, /proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/configs/conf/uppmax.config !! Only displaying parameters that differ from the pipeline defaults !! ------------------------------------------------------ * The pipeline https://doi.org/10.1101/2023.06.05.543770 * The nf-core framework https://doi.org/10.1038/s41587-020-0439-x * Software dependencies https://github.com/nf-core/pixelator/blob/master/CITATIONS.md WARN: The following invalid input values have been detected: * --save_reference: true * --igenomes_base: /sw/data/igenomes/ Resolving relative paths in samplesheet relative to: file:///vulpes/proj/snpseq/ngi2016005/nobackup/private/single_cell/YJ4465/pixelgen_run_dir/samplesheet.csv [- ] PIP…ION:PIXELATOR_LIST_OPTIONS - [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] PIP…ION:PIXELATOR_LIST_OPTIONS - [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [- ] NFC…PNA:PIXELATOR_PNA_AMPLICON - [- ] NFC…OR:PNA:PIXELATOR_PNA_DEMUX - [- ] NFC…PNA:PIXELATOR_PNA_COLLAPSE - [- ] NFC…LATOR_PNA_COMBINE_COLLAPSE - [- ] NFC…OR:PNA:PIXELATOR_PNA_GRAPH - [- ] NFC…:PNA:PIXELATOR_PNA_DENOISE - [- ] NFC…PNA:PIXELATOR_PNA_ANALYSIS - [- ] NFC…R:PNA:PIXELATOR_PNA_LAYOUT - [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [b4/640e03] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [- ] NFC…OR:PNA:PIXELATOR_PNA_DEMUX - [- ] NFC…PNA:PIXELATOR_PNA_COLLAPSE - [- ] NFC…LATOR_PNA_COMBINE_COLLAPSE - [- ] NFC…OR:PNA:PIXELATOR_PNA_GRAPH - [- ] NFC…:PNA:PIXELATOR_PNA_DENOISE - [- ] NFC…PNA:PIXELATOR_PNA_ANALYSIS - [- ] NFC…R:PNA:PIXELATOR_PNA_LAYOUT - [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [de/a62052] NFC…J-4465-D-93-Y-24h-culture) | 6 of 6, cached: 6 [44/c307e3] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [55/13112e] NFC…J-4465-B2-91-V-after-thaw) | 3 of 3, cached: 3 [- ] NFC…LATOR_PNA_COMBINE_COLLAPSE - [- ] NFC…OR:PNA:PIXELATOR_PNA_GRAPH - [- ] NFC…:PNA:PIXELATOR_PNA_DENOISE - [- ] NFC…PNA:PIXELATOR_PNA_ANALYSIS - [- ] NFC…R:PNA:PIXELATOR_PNA_LAYOUT - [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [df/ba099c] NFC…J-4465-B2-91-V-after-thaw) | 7 of 7, cached: 7 [- ] NFC…LATOR_PNA_COMBINE_COLLAPSE - [- ] NFC…OR:PNA:PIXELATOR_PNA_GRAPH - [- ] NFC…:PNA:PIXELATOR_PNA_DENOISE - [- ] NFC…PNA:PIXELATOR_PNA_ANALYSIS - [- ] NFC…R:PNA:PIXELATOR_PNA_LAYOUT - [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [21/79e128] NFC…J-4465-B2-91-V-after-thaw) | 13 of 13, cached: 13 [- ] NFC…LATOR_PNA_COMBINE_COLLAPSE - [- ] NFC…OR:PNA:PIXELATOR_PNA_GRAPH - [- ] NFC…:PNA:PIXELATOR_PNA_DENOISE - [- ] NFC…PNA:PIXELATOR_PNA_ANALYSIS - [- ] NFC…R:PNA:PIXELATOR_PNA_LAYOUT - [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [80/7fcdb0] NFC…J-4465-B2-93-V-after-thaw) | 19 of 19, cached: 19 [89/49d883] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [- ] NFC…OR:PNA:PIXELATOR_PNA_GRAPH - [- ] NFC…:PNA:PIXELATOR_PNA_DENOISE - [- ] NFC…PNA:PIXELATOR_PNA_ANALYSIS - [- ] NFC…R:PNA:PIXELATOR_PNA_LAYOUT - [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [1e/5f6e00] NFC…J-4465-B2-93-V-after-thaw) | 24 of 24, cached: 24 [89/49d883] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [f7/bdb8bd] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [87/a0e5da] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [- ] NFC…PNA:PIXELATOR_PNA_ANALYSIS - [- ] NFC…R:PNA:PIXELATOR_PNA_LAYOUT - [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [a7/e0de90] NFC…J-4465-B2-93-V-after-thaw) | 30 of 30, cached: 30 [89/49d883] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [f7/bdb8bd] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [87/a0e5da] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [1c/ec8e56] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [5a/4b10f6] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [69/4c390e] NFC…YJ-4465-D-91-V-after-thaw) | 35 of 35, cached: 35 [dc/91734b] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [4f/c34270] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [5d/41172a] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [1c/ec8e56] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [5a/4b10f6] NFC…J-4465-B2-91-V-after-thaw) | 1 of 1, cached: 1 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [45/4422d1] NFC…YJ-4465-D-91-V-after-thaw) | 42 of 42, cached: 42 [dc/91734b] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [4f/c34270] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [5d/41172a] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [0a/c2ee26] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [b0/049096] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [b1/74015c] NFC…YJ-4465-D-91-Y-after-thaw) | 47 of 47, cached: 47 [f4/55fe90] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [dd/58ed5a] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [5d/41172a] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [0a/c2ee26] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [b0/049096] NFC…J-4465-B2-93-V-after-thaw) | 2 of 2, cached: 2 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [9a/9c68ea] NFC…YJ-4465-D-91-Y-after-thaw) | 55 of 55, cached: 55 [f4/55fe90] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [dd/58ed5a] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [73/1ee9d7] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [2e/05a55f] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [ad/628d79] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [10/70e8d3] NFC…J-4465-D-93-Y-24h-culture) | 62 of 62, cached: 62 [f4/55fe90] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [dd/58ed5a] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [73/1ee9d7] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [2e/05a55f] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [ad/628d79] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [28/ea54f0] NFC…J-4465-D-93-Y-24h-culture) | 68 of 68, cached: 68 [93/478947] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [9a/f87ad2] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [8a/ea7276] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [2e/05a55f] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [ad/628d79] NFC…YJ-4465-D-91-V-after-thaw) | 3 of 3, cached: 3 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [c0/46174f] NFC…YJ-4465-D-93-V-after-thaw) | 76 of 76, cached: 76 [c0/d9541e] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [9a/f87ad2] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [8a/ea7276] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [9a/1a78c2] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [24/570109] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [ef/e34f67] NFC…YJ-4465-D-93-V-after-thaw) | 81 of 81, cached: 81 [c0/d9541e] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [a7/966332] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [f7/55aa9c] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [39/a70842] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [24/570109] NFC…YJ-4465-D-91-Y-after-thaw) | 4 of 4, cached: 4 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [36/776e73] NFC…YJ-4465-D-93-V-after-thaw) | 87 of 87, cached: 87 [c0/d9541e] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [a7/966332] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [f7/55aa9c] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [39/a70842] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [9c/c65e8d] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [33/b80917] NFC…YJ-4465-D-93-Y-after-thaw) | 93 of 93, cached: 93 [14/7e1bde] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [68/93b35d] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [10/03a603] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [39/a70842] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [9c/c65e8d] NFC…J-4465-D-93-Y-24h-culture) | 5 of 5, cached: 5 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [63/f8e0c0] NFC…YJ-4465-D-93-Y-after-thaw) | 102 of 102, cached: 102 [14/7e1bde] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [68/93b35d] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [10/03a603] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [77/9bc8a3] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [10/57df23] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [fb/8f1ad8] NFC…vs-D-93-Y-1-1-24h-culture) | 109 of 109, cached: 109 [10/f32cac] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [5f/de5e68] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [10/03a603] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [77/9bc8a3] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [10/57df23] NFC…YJ-4465-D-93-V-after-thaw) | 6 of 6, cached: 6 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [ac/f182ce] NFC…vs-D-93-Y-1-1-24h-culture) | 116 of 116, cached: 116 [10/f32cac] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [5f/de5e68] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [e8/90f4b9] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [84/f0aeb2] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [68/9674aa] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [94/fcac2a] NFC…vs-D-93-Y-1-1-24h-culture) | 120 of 120, cached: 120 ✔ [64/67ab6f] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [5f/de5e68] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [e8/90f4b9] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [84/f0aeb2] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [68/9674aa] NFC…YJ-4465-D-93-Y-after-thaw) | 7 of 7, cached: 7 [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [94/fcac2a] NFC…vs-D-93-Y-1-1-24h-culture) | 120 of 120, cached: 120 ✔ [64/67ab6f] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [47/82caf6] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [2c/ff20c4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [dc/5b1069] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/d3e3a3] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [- ] NFC…PORTS:PIXELATOR_PNA_REPORT - Plus 1 more processes waiting for tasks… executor > slurm (1) [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [94/fcac2a] NFC…vs-D-93-Y-1-1-24h-culture) | 120 of 120, cached: 120 ✔ [64/67ab6f] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [47/82caf6] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [2c/ff20c4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [dc/5b1069] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/d3e3a3] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [5b/5234d9] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/dff74a] NFC…MENT_SUMMARY (all-samples) | 0 of 1 executor > slurm (1) [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [94/fcac2a] NFC…vs-D-93-Y-1-1-24h-culture) | 120 of 120, cached: 120 ✔ [64/67ab6f] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [47/82caf6] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [2c/ff20c4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [dc/5b1069] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/d3e3a3] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [5b/5234d9] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/dff74a] NFC…MENT_SUMMARY (all-samples) | 0 of 1 executor > slurm (1) [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [94/fcac2a] NFC…vs-D-93-Y-1-1-24h-culture) | 120 of 120, cached: 120 ✔ [64/67ab6f] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [47/82caf6] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [2c/ff20c4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [dc/5b1069] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/d3e3a3] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [5b/5234d9] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/dff74a] NFC…MENT_SUMMARY (all-samples) | 0 of 1 ERROR ~ Error executing process > 'NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY (all-samples)' Caused by: Process `NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY (all-samples)` terminated with an error exit status (1) Command executed: # Copy the full quarto dir from the read-only image into the workdir cp -r /workspace/inst/quarto/ ./quarto/ quarto render ./quarto/pixelatorES.qmd \ -P sample_sheet="$PWD/samplesheet.csv" \ -P data_folder="$PWD/results/" mv ./quarto/pixelatorES.html experiment-summary.html cat <<-END_VERSIONS > versions.yml "NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY": experiment-summary: $(Rscript -e 'cat(as.character(packageVersion("pixelatorES")), "\n")') END_VERSIONS Command exit status: 1 Command output: (empty) Command error: Backtrace: ▆ 1. ├─pixelatorES::read_samplesheet(params$sample_sheet) 2. │ └─... %>% distinct() 3. ├─dplyr::distinct(.) 4. ├─dplyr::mutate(...) 5. ├─dplyr::select(., sample, sample_alias, condition) 6. ├─dplyr:::select.data.frame(., sample, sample_alias, condition) 7. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call) 8. │ └─tidyselect:::eval_select_impl(...) 9. │ ├─tidyselect:::with_subscript_errors(...) 10. │ │ └─base::withCallingHandlers(...) 11. │ └─tidyselect:::vars_select_eval(...) 12. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 13. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 14. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 15. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 16. │ └─tidyselect:::as_indices_sel_impl(...) 17. │ └─tidyselect:::as_indices_impl(...) 18. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg) 19. │ └─vctrs::vec_as_location(...) 20. └─vctrs (local) ``() 21. └─vctrs:::stop_subscript_oob(...) 22. └─vctrs:::stop_subscript(...) 23. └─rlang::abort(...) Quitting from /scratch/11238223/nxf.WVQR46I2aF/quarto/preprocessing.qmd:29-39 [read_sample_sheet] Quitting from pixelatorES.qmd:46-47 [unnamed-chunk-1] Execution halted Work dir: /vulpes/proj/snpseq/ngi2016005/nobackup/private/single_cell/YJ4465/pixelgen_run_dir/work/93/dff74ad4974458bf98d9ee9d9f025e Container: /proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/singularity-images/quay.io-pixelgen-technologies-pixelatores-0.4.3.img Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh` -- Check '.nextflow.log' file for details executor > slurm (1) [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [94/fcac2a] NFC…vs-D-93-Y-1-1-24h-culture) | 120 of 120, cached: 120 ✔ [64/67ab6f] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [47/82caf6] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [2c/ff20c4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [dc/5b1069] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/d3e3a3] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [5b/5234d9] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/dff74a] NFC…MENT_SUMMARY (all-samples) | 0 of 1 ✘ Execution cancelled -- Finishing pending tasks before exit ERROR ~ Error executing process > 'NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY (all-samples)' Caused by: Process `NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY (all-samples)` terminated with an error exit status (1) Command executed: # Copy the full quarto dir from the read-only image into the workdir cp -r /workspace/inst/quarto/ ./quarto/ quarto render ./quarto/pixelatorES.qmd \ -P sample_sheet="$PWD/samplesheet.csv" \ -P data_folder="$PWD/results/" mv ./quarto/pixelatorES.html experiment-summary.html cat <<-END_VERSIONS > versions.yml "NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY": experiment-summary: $(Rscript -e 'cat(as.character(packageVersion("pixelatorES")), "\n")') END_VERSIONS Command exit status: 1 Command output: (empty) Command error: Backtrace: ▆ 1. ├─pixelatorES::read_samplesheet(params$sample_sheet) 2. │ └─... %>% distinct() 3. ├─dplyr::distinct(.) 4. ├─dplyr::mutate(...) 5. ├─dplyr::select(., sample, sample_alias, condition) 6. ├─dplyr:::select.data.frame(., sample, sample_alias, condition) 7. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call) 8. │ └─tidyselect:::eval_select_impl(...) 9. │ ├─tidyselect:::with_subscript_errors(...) 10. │ │ └─base::withCallingHandlers(...) 11. │ └─tidyselect:::vars_select_eval(...) 12. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 13. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 14. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 15. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 16. │ └─tidyselect:::as_indices_sel_impl(...) 17. │ └─tidyselect:::as_indices_impl(...) 18. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg) 19. │ └─vctrs::vec_as_location(...) 20. └─vctrs (local) ``() 21. └─vctrs:::stop_subscript_oob(...) 22. └─vctrs:::stop_subscript(...) 23. └─rlang::abort(...) Quitting from /scratch/11238223/nxf.WVQR46I2aF/quarto/preprocessing.qmd:29-39 [read_sample_sheet] Quitting from pixelatorES.qmd:46-47 [unnamed-chunk-1] Execution halted Work dir: /vulpes/proj/snpseq/ngi2016005/nobackup/private/single_cell/YJ4465/pixelgen_run_dir/work/93/dff74ad4974458bf98d9ee9d9f025e Container: /proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/singularity-images/quay.io-pixelgen-technologies-pixelatores-0.4.3.img Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh` -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details executor > slurm (1) [da/4c79c2] PIP…ION:PIXELATOR_LIST_OPTIONS | 1 of 1, cached: 1 ✔ [- ] NFC…ELATOR:PIXELATOR:CAT_FASTQ - [- ] NFC…TOR:MPX:PIXELATOR_AMPLICON - [- ] NFC…PIXELATOR:MPX:PIXELATOR_QC - [- ] NFC…ELATOR:MPX:PIXELATOR_DEMUX - [- ] NFC…TOR:MPX:PIXELATOR_COLLAPSE - [- ] NFC…ELATOR:MPX:PIXELATOR_GRAPH - [- ] NFC…TOR:MPX:PIXELATOR_ANNOTATE - [- ] NFC…TOR:MPX:PIXELATOR_ANALYSIS - [- ] NFC…LATOR:MPX:PIXELATOR_LAYOUT - [- ] NFC…E_REPORTS:PIXELATOR_REPORT - [ad/e987a6] NFC…YJ-4465-D-93-Y-after-thaw) | 8 of 8, cached: 8 ✔ [f5/5d04e4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [94/fcac2a] NFC…vs-D-93-Y-1-1-24h-culture) | 120 of 120, cached: 120 ✔ [64/67ab6f] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [47/82caf6] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [2c/ff20c4] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [dc/5b1069] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/d3e3a3] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [5b/5234d9] NFC…vs-D-93-Y-1-1-24h-culture) | 8 of 8, cached: 8 ✔ [93/dff74a] NFC…MENT_SUMMARY (all-samples) | 0 of 1 ✘ Execution cancelled -- Finishing pending tasks before exit -[nf-core/pixelator] Pipeline completed with errors- ERROR ~ Error executing process > 'NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY (all-samples)' Caused by: Process `NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY (all-samples)` terminated with an error exit status (1) Command executed: # Copy the full quarto dir from the read-only image into the workdir cp -r /workspace/inst/quarto/ ./quarto/ quarto render ./quarto/pixelatorES.qmd \ -P sample_sheet="$PWD/samplesheet.csv" \ -P data_folder="$PWD/results/" mv ./quarto/pixelatorES.html experiment-summary.html cat <<-END_VERSIONS > versions.yml "NFCORE_PIXELATOR:PIXELATOR:PNA:PNA_GENERATE_REPORTS:EXPERIMENT_SUMMARY": experiment-summary: $(Rscript -e 'cat(as.character(packageVersion("pixelatorES")), "\n")') END_VERSIONS Command exit status: 1 Command output: (empty) Command error: Backtrace: ▆ 1. ├─pixelatorES::read_samplesheet(params$sample_sheet) 2. │ └─... %>% distinct() 3. ├─dplyr::distinct(.) 4. ├─dplyr::mutate(...) 5. ├─dplyr::select(., sample, sample_alias, condition) 6. ├─dplyr:::select.data.frame(., sample, sample_alias, condition) 7. │ └─tidyselect::eval_select(expr(c(...)), data = .data, error_call = error_call) 8. │ └─tidyselect:::eval_select_impl(...) 9. │ ├─tidyselect:::with_subscript_errors(...) 10. │ │ └─base::withCallingHandlers(...) 11. │ └─tidyselect:::vars_select_eval(...) 12. │ └─tidyselect:::walk_data_tree(expr, data_mask, context_mask) 13. │ └─tidyselect:::eval_c(expr, data_mask, context_mask) 14. │ └─tidyselect:::reduce_sels(node, data_mask, context_mask, init = init) 15. │ └─tidyselect:::walk_data_tree(new, data_mask, context_mask) 16. │ └─tidyselect:::as_indices_sel_impl(...) 17. │ └─tidyselect:::as_indices_impl(...) 18. │ └─tidyselect:::chr_as_locations(x, vars, call = call, arg = arg) 19. │ └─vctrs::vec_as_location(...) 20. └─vctrs (local) ``() 21. └─vctrs:::stop_subscript_oob(...) 22. └─vctrs:::stop_subscript(...) 23. └─rlang::abort(...) Quitting from /scratch/11238223/nxf.WVQR46I2aF/quarto/preprocessing.qmd:29-39 [read_sample_sheet] Quitting from pixelatorES.qmd:46-47 [unnamed-chunk-1] Execution halted Work dir: /vulpes/proj/snpseq/ngi2016005/nobackup/private/single_cell/YJ4465/pixelgen_run_dir/work/93/dff74ad4974458bf98d9ee9d9f025e Container: /proj/ngi2016005/nobackup/private/single_cell/YJ4465/nf-core-pixelator_2.2.0/singularity-images/quay.io-pixelgen-technologies-pixelatores-0.4.3.img Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh` -- Check '.nextflow.log' file for details ERROR ~ Pipeline failed. Please refer to troubleshooting docs: https://nf-co.re/docs/usage/troubleshooting -- Check '.nextflow.log' file for details